BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0014.p
         (359 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313945|ref|YP_003778037.1| rod shape-determining MreC tran...   599   e-172

>gi|300313945|ref|YP_003778037.1| rod shape-determining MreC
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  599 bits (1544), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 293/323 (90%), Positives = 312/323 (96%)

Query: 1   MEIPPLFKQGASARVRVTVFALISVVMLVVDARMHVLGTLRQALGTALYPFQTVAMVPRD 60
           MEIPPLFKQGASARVRVTVFAL+S+VMLVVDARMHVLGT+RQAL TALYPFQTVAM+PRD
Sbjct: 20  MEIPPLFKQGASARVRVTVFALLSIVMLVVDARMHVLGTIRQALATALYPFQTVAMMPRD 79

Query: 61  AFTNSSEYFSSLASLQKENRELRQQQIVNAQLMQQERLLAAENVQLRKLLDMQQKVPVKS 120
           A T+ ++   +L +LQKENRELRQQQIVNAQL+QQERLLAAEN QLRKLL+MQQKVPVKS
Sbjct: 80  AATSITDSLVALNTLQKENRELRQQQIVNAQLLQQERLLAAENAQLRKLLEMQQKVPVKS 139

Query: 121 IVGEILYDARDPFTRKIILNRGSQQGVTAGQPVIDEVGIVGQVTRVFPFSSEVTLLTDKD 180
           IVGEILYDARDPFTRKIILNRGSQQGV AGQPVIDEVGIVGQVTRVFPF+SEVTLLTDKD
Sbjct: 140 IVGEILYDARDPFTRKIILNRGSQQGVEAGQPVIDEVGIVGQVTRVFPFTSEVTLLTDKD 199

Query: 181 QAIPVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDVLVTSGIDGVYPPGLSVASV 240
           QAIPVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGD+LVTSGIDG+YPPGL+VASV
Sbjct: 200 QAIPVQVLRNGLRSVAYGRGQTGALDLRFMPANADIQKGDMLVTSGIDGIYPPGLAVASV 259

Query: 241 ALVETRSADSFARIVCRPLAGIDRHRQLLILLVEPNLPPRPEPDVIDEKSAKLFKRRLRD 300
           ALVETRSADSFARIVCRPLAGIDRHRQLLILLVE NLPPRP+PDV+DEKSAKLFKRRLRD
Sbjct: 260 ALVETRSADSFARIVCRPLAGIDRHRQLLILLVEQNLPPRPQPDVVDEKSAKLFKRRLRD 319

Query: 301 STRDNSAEDANATPKDKPAEDRK 323
           STRD SA+DANATPKDKPAE+RK
Sbjct: 320 STRDTSADDANATPKDKPAEERK 342


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,032
Number of extensions: 38754
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,212,660
Effective search space: 331056180
Effective search space used: 331056180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)