BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0009.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum ser...   625   e-180

>gi|300313949|ref|YP_003778041.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 398

 Score =  625 bits (1612), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 331/370 (89%), Positives = 344/370 (92%), Gaps = 6/370 (1%)

Query: 33  CGTTQQAPRQTAQAPATPTKSAGTRPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA 92
           CGTT  A RQ      TP K+  +RPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA
Sbjct: 35  CGTTPPASRQGGVQAPTPVKAGSSRPSNVPALPAAGSGRGGYYKDDGPGDHIPDGLLDVA 94

Query: 93  DAEPQVEPVSKAASRPYAVFGKTYVPITDNNQPFIQRGVGSWYGKKFHGQKTSSGELYDM 152
           DAEPQVEPVSKAASRPYAVFGKTYVPITDN QPF+QRG+GSWYGKKFHGQKTSSGELYDM
Sbjct: 95  DAEPQVEPVSKAASRPYAVFGKTYVPITDN-QPFVQRGIGSWYGKKFHGQKTSSGELYDM 153

Query: 153 YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSYTAALKLGYLGTGS 212
           YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSYTAALKLGYLG+GS
Sbjct: 154 YKMTAAHPTLPIPSYARVTNLKTGKQVIVRINDRGPFHSSRIIDLSYTAALKLGYLGSGS 213

Query: 213 SELEVERILPEEAQRMADARRNGGSTTLAAADPINRAADTGAGGQGVSTGPVEINTVSAQ 272
           SELEVERILPEEAQRMADARRNG  T +AAADPIN+AAD GAG   VSTG VEIN+VS Q
Sbjct: 214 SELEVERILPEEAQRMADARRNG--TAVAAADPINKAADNGAG---VSTGAVEINSVSTQ 268

Query: 273 SLPPQPTVAAVQPINASTSSAAGGAGMAGGGGIINAVASGSAPSPAMPQAVPLTAGYYLQ 332
           +LPPQPTVAAVQPINAST+SAA GAG+ GGGGIINAVASGSAPSPAMPQAVPLTAGYYLQ
Sbjct: 269 NLPPQPTVAAVQPINASTTSAANGAGLNGGGGIINAVASGSAPSPAMPQAVPLTAGYYLQ 328

Query: 333 FGAYSQEANALVARDKLLPSLSGIVDSMQAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQR 392
           FGAYSQE NAL A++KLLPSLSGIVDSMQAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQR
Sbjct: 329 FGAYSQETNALQAKEKLLPSLSGIVDSMQAVQVNGLYRLYAGPYPTRPAAQNAAMLVRQR 388

Query: 393 SAGTPFIVER 402
           SAGTPFIVER
Sbjct: 389 SAGTPFIVER 398


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,737
Number of extensions: 51363
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)