BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0172.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A...   231   1e-62
gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A...    69   9e-14
gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT...    62   1e-11

>gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  231 bits (588), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 111/112 (99%)

Query: 1   VAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPN 60
           VAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPN
Sbjct: 219 VAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPN 278

Query: 61  LLHLPPTCAFAARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSNEHHG 112
           LLHLPPTCAFAARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQS+E HG
Sbjct: 279 LLHLPPTCAFAARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSSEQHG 330


>gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score = 68.9 bits (167), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)

Query: 1   VAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRR--GARLRQIPGMT 58
           V+ +AD VAVMYAG++VE   V  +   P HPYTQGL+  +P   +   G+ L+ IPG+ 
Sbjct: 218 VSRIADRVAVMYAGQVVETTDVAQLFAQPRHPYTQGLLNCIPVRGKTLPGSHLQAIPGVV 277

Query: 59  PNLLHLPPTCAFAARCERLSQQCLVAPAISEPLPA---HRVRCYHPTPSTQSNE 109
           P+L+     CAF  RC +    C   P + +       H+ RC     +  + E
Sbjct: 278 PSLVGQVSGCAFRNRCAKADSGCERDPQMVQQGSVTAPHQARCLKLDVAMDAME 331


>gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 1/100 (1%)

Query: 1   VAGLADEVAVMYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPN 60
           V  ++D V +MY GR+VE   V  +   P HPYTQ L+  +P    R      I G  P+
Sbjct: 231 VEHVSDRVVIMYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPS 290

Query: 61  LLHLPPTCAFAARCERLSQQCLVA-PAISEPLPAHRVRCY 99
            L+ P  C F  RC   +Q+C    P + E  P H   C+
Sbjct: 291 PLNPPTGCHFNPRCPHATQRCREEQPLLREIAPGHMSACH 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 395,875
Number of extensions: 16032
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 3
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)