BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0171.p (202 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 377 e-106 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 177 4e-46 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 155 2e-39 gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPa... 145 2e-36 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 123 1e-29 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 377 bits (969), Expect = e-106, Method: Compositional matrix adjust. Identities = 189/193 (97%), Positives = 191/193 (98%) Query: 1 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD Sbjct: 1 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 Query: 61 APGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 APGRIVGGEILFQGRDLV MDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA Sbjct: 61 APGRIVGGEILFQGRDLVRMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 Query: 121 HSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD 180 HSK+SRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD Sbjct: 121 HSKVSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD 180 Query: 181 EPTTALDVTIQXR 193 EPTTALDVTIQ + Sbjct: 181 EPTTALDVTIQAQ 193 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 177 bits (450), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 95/193 (49%), Positives = 129/193 (66%), Gaps = 1/193 (0%) Query: 1 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 MS L L+V+NL+ T G+L AV + V RG +L LVGESG GKS+T +++G++ Sbjct: 1 MSVL-LDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLP 59 Query: 61 APGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 + ILF G DL M L +L+G R+AMIFQ+PM +LNP + Q+ +A+L Sbjct: 60 RKAQCSADHILFDGVDLHGMPDKQLMQLRGKRMAMIFQEPMTSLNPSYTLGNQLCEAMLQ 119 Query: 121 HSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD 180 +SR +ARE A L GI++ E+RL+ YPHQLSGG+RQRV IA++++ PDLIIAD Sbjct: 120 QPGVSRAEARERALYLLHRTGISNAEDRLRQYPHQLSGGLRQRVMIAMSLMCNPDLIIAD 179 Query: 181 EPTTALDVTIQXR 193 EPTTALDVTIQ + Sbjct: 180 EPTTALDVTIQAQ 192 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 155 bits (392), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/195 (45%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 5 TLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD-APG 63 L+V +L F T E + AV D+S V +G L +VGESGSGKSV+ +I+ +++ G Sbjct: 7 VLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 Query: 64 RIVGGEILFQGR-----DLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAV 118 +I G + F R DL D ++R ++G IAMIFQ+PM +LNPV V Q+ +++ Sbjct: 67 KIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 Query: 119 LAHSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLII 178 H L R A+ A L M+ I + L +PHQLSGGMRQRV IA+A+ KP L+I Sbjct: 127 RLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 Query: 179 ADEPTTALDVTIQXR 193 ADEPTTALDVTIQ + Sbjct: 187 ADEPTTALDVTIQAQ 201 Score = 125 bits (315), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 80/198 (40%), Positives = 117/198 (59%), Gaps = 16/198 (8%) Query: 6 LEVRNLRTHFFTPEGVL-------PAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGM 58 L+VR+L T F G+ AV+ VS + G L +VGESG GKS TG S+L + Sbjct: 313 LKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGCGKSTTGRSLLRL 372 Query: 59 VDAPGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAV 118 VD I GG++ F GRDL + ++ LR+L+ + I IFQDP +L+P + V +++ + Sbjct: 373 VD----IAGGKVEFGGRDLAQLPRSELRQLRRD-IQFIFQDPFASLDPRMTVGYSIMEPM 427 Query: 119 LAHSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLII 178 L H ++ A+E L +G+ +PE Q YPH+ SGG RQR+ IA A+ P ++I Sbjct: 428 LVHGM--KEGAQERVDALLTRVGL-TPEHG-QRYPHEFSGGQRQRICIARALALNPKIVI 483 Query: 179 ADEPTTALDVTIQXRPVG 196 ADE +ALDV+IQ + V Sbjct: 484 ADESVSALDVSIQAQIVN 501 >gi|300312716|ref|YP_003776808.1| ABC transporter duplicated ATPase [Herbaspirillum seropedicae SmR1] Length = 529 Score = 145 bits (367), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/191 (43%), Positives = 117/191 (61%), Gaps = 6/191 (3%) Query: 1 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 MSA LEV NL F G VD VS ++ G LVGESGSGK+V+ +++ + + Sbjct: 1 MSAALLEVNNLTVRF----GDTVVVDRVSFAIAPGEKFALVGESGSGKTVSSLAVMQL-N 55 Query: 61 APGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 R G IL G+D+++ + +++++GN +AMIFQ+PM LNP+ + Q+ + ++ Sbjct: 56 QDARY-EGSILLDGQDVLAKSERQMQQVRGNDVAMIFQEPMTALNPLFTIGNQIAEVLMH 114 Query: 121 HSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIAD 180 H L+ + A A L GI P R +YPH+LSGG RQR IA+A+ KP L+IAD Sbjct: 115 HEGLNARDAARRAVALLEKTGIPEPARRALSYPHELSGGQRQRAMIAMALACKPKLLIAD 174 Query: 181 EPTTALDVTIQ 191 EPTTALDVTIQ Sbjct: 175 EPTTALDVTIQ 185 Score = 105 bits (261), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 12/192 (6%) Query: 6 LEVRNLRTHFFTPEGVLP-----AVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 L+ LR + +G AVD V L + RG LG+VGESGSGKS G ++L + Sbjct: 269 LQAERLRCTYHIKQGWFAKRAFHAVDGVDLQLRRGETLGIVGESGSGKSTLGMALLRLSA 328 Query: 61 APGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAV-L 119 A V G I F G + + LR L+ +R+ ++FQDP +L+P VE + + + L Sbjct: 329 AS---VAGSIRFDGVPISERPQRELRPLR-SRMQVVFQDPFASLSPRRTVEQIVGEGLEL 384 Query: 120 AHSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIA 179 H S +Q R+ L +G+++ L+ YPH+ SGG RQR+AIA A++ +P+L++ Sbjct: 385 HHPDRSAEQQRQAIVAALEEVGLSAAV--LERYPHEFSGGQRQRIAIARALVLQPELLLL 442 Query: 180 DEPTTALDVTIQ 191 DEPT+ALDVT+Q Sbjct: 443 DEPTSALDVTVQ 454 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 123 bits (309), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 114/194 (58%), Gaps = 13/194 (6%) Query: 1 MSALTLEVRNLRTHFFTPEGVLPAVDDVSLSVGRGRILGLVGESGSGKSVTGFSILGMVD 60 + ALT +V L+ F P G L AV+DVSL + RG LGLVGESG GKS +LG++ Sbjct: 18 LCALT-KVYPLKRGLFQPPGQLKAVNDVSLRLYRGETLGLVGESGCGKSTLAKMLLGLLP 76 Query: 61 APGRIVGGEILFQGRDLVSMDKTSLRELQGNRIAMIFQDPMMTLNPVLKVEAQMVDAVLA 120 G +L G++ +D T R+ I IFQDP +LNP K A++V L Sbjct: 77 P----TSGNVLINGQE---VDPTE-RKAHARHIQPIFQDPYSSLNPR-KTVAEIVGLPLK 127 Query: 121 -HSKLSRQQARELARDTLGMMGIASPEERLQAYPHQLSGGMRQRVAIAIAMLHKPDLIIA 179 H + + +D L ++G+ PE YP+QLSGG RQRVAIA A++ +PD++I Sbjct: 128 LHGIGNAAERNRQVKDILDLVGM--PERTHAQYPNQLSGGQRQRVAIARALILRPDILIC 185 Query: 180 DEPTTALDVTIQXR 193 DEPT+ALDV++Q + Sbjct: 186 DEPTSALDVSVQAQ 199 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 628,128 Number of extensions: 27806 Number of successful extensions: 409 Number of sequences better than 1.0e-08: 86 Number of HSP's gapped: 338 Number of HSP's successfully gapped: 92 Length of query: 202 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 121 Effective length of database: 1,236,335 Effective search space: 149596535 Effective search space used: 149596535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)