BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0163.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas... 616 e-178 gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas... 307 8e-85 gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas... 303 1e-83 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 188 4e-49 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 182 3e-47 >gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 336 Score = 616 bits (1588), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/336 (91%), Positives = 324/336 (96%) Query: 1 VIRIEQLHKTYRAGQRDIIALQDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +IRIEQLHKTYRAGQRDIIAL+DINLDIAQGE+FGIIGRSGAGKSTLIRTLNVLERPDSG Sbjct: 1 MIRIEQLHKTYRAGQRDIIALRDINLDIAQGEVFGIIGRSGAGKSTLIRTLNVLERPDSG 60 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYTREQRAA 120 RVLIDGEDITGLGHEALLGLRQRVGM+FQHFNLLNAKTVAQNIDWPLKITGRY+RE+RAA Sbjct: 61 RVLIDGEDITGLGHEALLGLRQRVGMVFQHFNLLNAKTVAQNIDWPLKITGRYSREERAA 120 Query: 121 RVTELLALVGLDAHRDQYPAQLSGGQKQRVGIARALANSPRLLLCDEATSALDPETTQSI 180 RV ELL LVGLDAHRDQYP+QLSGGQKQRVGIARALAN PRLLLCDEATSALDPETTQSI Sbjct: 121 RVDELLQLVGLDAHRDQYPSQLSGGQKQRVGIARALANHPRLLLCDEATSALDPETTQSI 180 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLDQGAVAEQGRVVDIFLRPQHAVTRS 240 LRLLL+INRKLGLTIVLITHEMEVIRSICDRVAVLD GAVAEQGRVVDIFLRPQHAVTRS Sbjct: 181 LRLLLEINRKLGLTIVLITHEMEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRS 240 Query: 241 LLAESHAWDASDTLYQRRPDGALVRLTYAGEVAAQPILSQLTAATTALATIVRGTVSRIK 300 LL +SHAWDA ++LYQRRPDG LVRLTYAG++AAQPILSQLTAAT+ALATIVRGTVSRIK Sbjct: 241 LLTQSHAWDAGESLYQRRPDGKLVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIK 300 Query: 301 DTPYGQLLVEFSGGDEAVAQVLARLRDSGIDHEVLA 336 DTPYGQLLVEFSG +A+AQVL RL+ S I+HEVLA Sbjct: 301 DTPYGQLLVEFSGDADALAQVLDRLQTSDIEHEVLA 336 >gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 345 Score = 307 bits (786), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 166/332 (50%), Positives = 226/332 (68%), Gaps = 14/332 (4%) Query: 10 TYRAGQRDIIALQDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGEDI 69 T R G ++ A++ ++L I +GEIFGIIGRSGAGKSTL+RTLN+L RP SGR+++DG+D+ Sbjct: 8 TQRFG--NVEAVRKVDLSIRKGEIFGIIGRSGAGKSTLVRTLNLLNRPTSGRIVLDGQDL 65 Query: 70 TGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYTREQRAARVTELLALV 129 T L L R+ +GMIFQHFNLL++++V NI PL++ G+ ++ + AA+V LL LV Sbjct: 66 TSLSAAQLREARRGIGMIFQHFNLLSSRSVYDNIALPLELAGK-SKAEIAAKVEPLLELV 124 Query: 130 GLDAHRDQYPAQLSGGQKQRVGIARALANSPRLLLCDEATSALDPETTQSILRLLLDINR 189 GL A RD+YPAQ+SGGQKQRVGIARALAN P++LL DEATSALDPETT+SIL LL IN+ Sbjct: 125 GLTALRDRYPAQISGGQKQRVGIARALANDPKVLLSDEATSALDPETTRSILELLRKINK 184 Query: 190 KLGLTIVLITHEMEVIRSICDRVAVLDQGAVAEQGRVVDIFLRPQHAVTRSLLAESHAWD 249 +LGLTIVLITH+MEVI+ ICDRVAV++ G V EQG V+D+F +P+H VTR+L+ + A + Sbjct: 185 ELGLTIVLITHQMEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHE 244 Query: 250 ASDTLYQR------RPDGA-----LVRLTYAGEVAAQPILSQLTAATTALATIVRGTVSR 298 + R R D L R + G QP LS+ I+ G + Sbjct: 245 LPKGVLARLRERLARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDE 304 Query: 299 IKDTPYGQLLVEFSGGDEAVAQVLARLRDSGI 330 I+ +G L + +G + + Q + LR+ G+ Sbjct: 305 IQGQAFGSLAILANGTQDNINQAMQYLREQGV 336 >gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 389 Score = 303 bits (777), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 172/307 (56%), Positives = 211/307 (68%), Gaps = 7/307 (2%) Query: 9 KTYRAGQRDIIALQDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSGRVLIDGED 68 KTY + + ALQDI+L+IA G IFGIIGRSGAGKS+L+RT+N LERP SGRV +D D Sbjct: 46 KTYVSAAGPVQALQDIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLERPTSGRVEVDDVD 105 Query: 69 ITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYTREQRAARVTELLAL 128 + L L+ LR+R+GMIFQHFNLL AKTV NI PL++ G R Q RV ELLAL Sbjct: 106 LATLDETQLVALRRRIGMIFQHFNLLAAKTVFDNIALPLRVAG-VPRAQITQRVHELLAL 164 Query: 129 VGLDAHRDQYPAQLSGGQKQRVGIARALANSPRLLLCDEATSALDPETTQSILRLLLDIN 188 VGL D YP +LSGGQKQRVGIARALA+ P +LLCDEATSALDPETTQSIL+LL DIN Sbjct: 165 VGLQDKADSYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTQSILQLLRDIN 224 Query: 189 RKLGLTIVLITHEMEVIRSICDRVAVLDQGAVAEQGRVVDIFLRPQHAVTRSLLAE-SHA 247 RKLG+TI+LITHEM VIR I DRV VL+QG VAE G V +F +PQHA TR+LLA H Sbjct: 225 RKLGITIILITHEMSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAPLQHG 284 Query: 248 W--DASDTLYQRRPDG---ALVRLTYAGEVAAQPILSQLTAATTALATIVRGTVSRIKDT 302 + L + P G +++L + G QP L ++ A +++ V I+ Sbjct: 285 LPQELQQALQPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGH 344 Query: 303 PYGQLLV 309 +GQL++ Sbjct: 345 THGQLVL 351 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 188 bits (478), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 150/236 (63%), Gaps = 5/236 (2%) Query: 1 VIRIEQLHKTYRAGQRDIIALQDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 +++I+ LHK++ + + L ++LD+ +G++ IIG+SG+GKSTL+R LN LE+ D+G Sbjct: 4 IVKIKDLHKSFGSNK----VLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAG 59 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYTREQRAA 120 + + G DI L LR++VG++FQ +NL TV +NI L + + EQ Sbjct: 60 DIQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKT 119 Query: 121 RVTELLALVGLDAHRDQYPAQLSGGQKQRVGIARALANSPRLLLCDEATSALDPETTQSI 180 ++L LVGL+ +D YP QLSGGQ QRV IAR+LA +P L+L DE TSALDPE T + Sbjct: 120 IAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEV 179 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLDQGAVAEQGRVVDIFLRPQHA 236 L+++ D+ R G+T+VL+THEM R + D + + QG V E G ++F P+ A Sbjct: 180 LKVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTA 234 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 182 bits (463), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 99/243 (40%), Positives = 144/243 (59%), Gaps = 6/243 (2%) Query: 1 VIRIEQLHKTYRAGQRDIIALQDINLDIAQGEIFGIIGRSGAGKSTLIRTLNVLERPDSG 60 ++ I + K + + Q L I+L + +G++ IIGRSG+GKST++R +N LE D G Sbjct: 3 IVEINNITKRFGSNQ----VLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGG 58 Query: 61 RVLIDGEDITGLGHEALLGLRQRVGMIFQHFNLLNAKTVAQNIDWPLKITGRYTREQRAA 120 + + G +T HE L+ LR+ VGM+FQH+NL TV +NI +I + E Sbjct: 59 SITVAGHKLTH-KHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARE 117 Query: 121 RVTELLALVGLDAHRDQYPAQLSGGQKQRVGIARALANSPRLLLCDEATSALDPETTQSI 180 ++L VGLD RD YP QLSGGQ+QRV IAR+LA P+++L DE TSALDPE T + Sbjct: 118 TAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEV 177 Query: 181 LRLLLDINRKLGLTIVLITHEMEVIRSICDRVAVLDQGAVAEQGRVVDIFLRPQHAVTRS 240 L+++ ++ R G+T++L+THEME R + D + QG V E + F PQ R Sbjct: 178 LKVMEELARG-GMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQ 236 Query: 241 LLA 243 + Sbjct: 237 FIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,020,548 Number of extensions: 42721 Number of successful extensions: 581 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 147 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)