BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0162.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310888|ref|YP_003774980.1| metal ion ABC transporter perme...   351   3e-98
gi|300310326|ref|YP_003774418.1| metal ion ABC transporter perme...   164   4e-42
gi|300311639|ref|YP_003775731.1| metal ion ABC transporter perme...   159   1e-40

>gi|300310888|ref|YP_003774980.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  351 bits (900), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 218/229 (95%), Positives = 223/229 (97%)

Query: 4   LSSLSALVGQIDLSVIDWSEVGDATVETLAMTGGSLFFTVFLGLPLGILLFLTNRGQLLE 63
           +S+LS+L  QIDLSVIDW EVGDAT+ETLAMTGGSLFFTV LGLPLGILLFLTNR QLLE
Sbjct: 1   MSALSSLFSQIDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLE 60

Query: 64  QRGLYWVLSLVVNVLRSVPFLILLILLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT 123
           QRGLY VLSLVVNVLRSVPFLILLI+LIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT
Sbjct: 61  QRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT 120

Query: 124 ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG 183
           ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG
Sbjct: 121 ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG 180

Query: 184 GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 232
           GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK
Sbjct: 181 GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK 229


>gi|300310326|ref|YP_003774418.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 217

 Score =  164 bits (416), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 135/203 (66%)

Query: 30  ETLAMTGGSLFFTVFLGLPLGILLFLTNRGQLLEQRGLYWVLSLVVNVLRSVPFLILLIL 89
           ETL M   S      LG+PLGI L +T    +L       +  L+VN +RS PF+ILL+ 
Sbjct: 15  ETLMMVVISGVVGSLLGIPLGIALHITEAKGVLPNVAFNRIAGLLVNAVRSTPFIILLVA 74

Query: 90  LIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLTESVLREIDRGILEACTAMGARRRQII 149
           +IP T + VGTS+G   AI PL I  APF ARL E+ LRE+D G++EA  AMGA   QII
Sbjct: 75  VIPMTRFFVGTSIGTAAAIVPLTIAAAPFIARLVETALREVDHGLVEAAQAMGATTWQII 134

Query: 150 FGALLPEALPGLLAAVTITAITLMSYAAMSGVIGGGGLGDLAIRYGYQRFQTEVMVVTVA 209
           +  L+PEA  G++A +TIT ++L+ Y+AM+G IGGGGLGDL IRYGYQRF  EVM+  V 
Sbjct: 135 YKVLVPEAFAGIVAGLTITFVSLVGYSAMAGAIGGGGLGDLGIRYGYQRFLPEVMLAVVL 194

Query: 210 ILVVLVQLLQFFGDRLVLRFTRK 232
           IL+V VQL+Q  GD LV + + +
Sbjct: 195 ILIVFVQLVQSLGDLLVRKLSHR 217


>gi|300311639|ref|YP_003775731.1| metal ion ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 199

 Score =  159 bits (403), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 129/187 (68%)

Query: 46  GLPLGILLFLTNRGQLLEQRGLYWVLSLVVNVLRSVPFLILLILLIPFTLWLVGTSLGVT 105
           G+PL +LL ++  G  L+   L+ VL  V+N  R+ PF++LL+ LIP T  + GT++GV 
Sbjct: 13  GVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPLTRLVAGTTIGVW 72

Query: 106 GAIPPLVIGTAPFFARLTESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAV 165
            AI PL I   PFFAR+ E  LRE+D G++EA  A+G R+  I++   LPEALPG++   
Sbjct: 73  AAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVYLPEALPGIVGGF 132

Query: 166 TITAITLMSYAAMSGVIGGGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRL 225
           TIT + L+S +AM+G +G GGLGDLAIRYGYQRF T+VMV+ +A+L+VLV L+Q  GD  
Sbjct: 133 TITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIVLVSLVQRTGDSY 192

Query: 226 VLRFTRK 232
           V R   +
Sbjct: 193 VRRLRNR 199


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.145    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 451,119
Number of extensions: 12200
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)