BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0158.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 390 e-110 gi|300310886|ref|YP_003774978.1| amino acid ABC transporter peri... 351 2e-98 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 258 3e-70 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 119 3e-28 gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 117 6e-28 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 390 bits (1003), Expect = e-110, Method: Compositional matrix adjust. Identities = 204/265 (76%), Positives = 214/265 (80%), Gaps = 25/265 (9%) Query: 1 MKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLD 60 M K +LAV L L + +A+ADALADIQK G VRI VPQDFAPFGSV +DLQLQGLD Sbjct: 3 MSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQGLD 62 Query: 61 IDVAKLIAQKMGVKVQLVPVASANRIAX-------------------------SQSYAPY 95 IDVA+LIAQKMGVK+QLVPVASANRIA SQ YAPY Sbjct: 63 IDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYAPY 122 Query: 96 NNSVFGVASVQVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 155 NNSVFGVASV+VSGPADLA KTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS Sbjct: 123 NNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 182 Query: 156 GQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKK 215 GQVQLVGTGDFVAYALAEKAP NKPVLKYII ES+C+VGLNKGE ALL KVNE LTAAKK Sbjct: 183 GQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAAKK 242 Query: 216 SGELNAIVQKWLNVPLPAKMATTFQ 240 SGELN IVQKWLNVPLPAKMA T Q Sbjct: 243 SGELNGIVQKWLNVPLPAKMAATLQ 267 >gi|300310886|ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 351 bits (901), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/265 (65%), Positives = 204/265 (76%), Gaps = 25/265 (9%) Query: 1 MKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLD 60 M F K +A SL L+ ++ A AD LADIQKAG V+I VPQDFAP+GSVTSDLQLQGLD Sbjct: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 Query: 61 IDVAKLIAQKMGVKVQLVPVASANRIAX-------------------------SQSYAPY 95 IDVA+L+A+ MGVK +LVPV ++R+A SQ YAPY Sbjct: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 Query: 96 NNSVFGVASVQVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 155 NNSVFGVA+++V+GPADLA +TVGVAR TF+DL LTD+ PKS IKRYEDNN +I+AYVS Sbjct: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 Query: 156 GQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKK 215 GQVQLVGTGDFVAYALAEK P NKP+LKYIIN S+C VG+NKGE AL+ KVNE LTA+KK Sbjct: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 Query: 216 SGELNAIVQKWLNVPLPAKMATTFQ 240 SGELN IV+KWLNVPLP K+ATT+Q Sbjct: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 258 bits (659), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 134/258 (51%), Positives = 171/258 (66%), Gaps = 25/258 (9%) Query: 1 MKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLD 60 MK K +L + + S VA+ADAL DIQK GT+R+AVP DF PFGSV +DL+ QGLD Sbjct: 1 MKLTKLLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 Query: 61 IDVAKLIAQKMGVKVQLVPVASANRIAX-------------------------SQSYAPY 95 IDVA LIA+K+GVKV+L+PV+SANRI S +YAP+ Sbjct: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 Query: 96 NNSVFGVASVQVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 155 N VFG A + V ADLAGKT+ V RG+ +DL+LT P SAT+KRYEDNN+ IS+++S Sbjct: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 Query: 156 GQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKK 215 GQVQLV TG+ VA A+ + P KP K++I +S C +GLNKGE L KV+ +L +KK Sbjct: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 Query: 216 SGELNAIVQKWLNVPLPA 233 G L+AI QKWL +PLPA Sbjct: 241 DGSLSAISQKWLGMPLPA 258 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 119 bits (297), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 25/229 (10%) Query: 29 DIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLDIDVAKLIAQKMGVKVQLVPVASANRIA- 87 DI+ V +A+ PFG + L+ QG D++ A+L+A+ +GV++++V V NRI Sbjct: 32 DIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLAKDLGVELEIVQVTGPNRIPF 91 Query: 88 ----------XSQSYAPYNNSV------FGVASVQVSGPA--------DLAGKTVGVARG 123 S S P V +G + V+ P DL GK V V RG Sbjct: 92 LMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPKGENIKSLNDLVGKRVAVVRG 151 Query: 124 TFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYALAEKAPGNKPVLK 183 QD LT APK I R++D+ + +A +SGQV + T + +A A+A++ P K Sbjct: 152 NMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCTPNSLASAIAKQNPSKNLETK 211 Query: 184 YIINESSCSVGLNKGEAALLGKVNEVLTAAKKSGELNAIVQKWLNVPLP 232 + I + ++GL KGE AL +NE ++A K+G+L I Q+W+ P+P Sbjct: 212 FAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIYQQWVGSPMP 260 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 117 bits (294), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 122/245 (49%), Gaps = 26/245 (10%) Query: 14 LLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLDIDVAKLIAQKMGV 73 +LGL+ A AD L DI+KAG +RIA FG LQL G D++ A+L+AQ +GV Sbjct: 18 VLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLAGSDVEAARLLAQDLGV 77 Query: 74 KVQLVPVASANRIAXSQ-----------SYAPYNNSV------FGVASVQVSGP------ 110 ++ L+PVA+A R+ Q S P V + V S+ + P Sbjct: 78 QLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMVIK 137 Query: 111 --ADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVA 168 ADL GK +GV R T D T A K A I RYED+ +I++ V+GQV + + Sbjct: 138 DYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDATLITSMVTGQVDVFSSTPSNL 196 Query: 169 YALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKKSGELNAIVQKWLN 228 + +KAPG +K+ + +NK + L ++ + K+G+LNAI +K+ Sbjct: 197 QEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHG 256 Query: 229 VPLPA 233 LPA Sbjct: 257 RDLPA 261 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.129 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 652,747 Number of extensions: 25317 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 9 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 129 (54.3 bits)