BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0144.p
         (181 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310881|ref|YP_003774973.1| hypothetical protein Hsero_1552...   336   7e-94

>gi|300310881|ref|YP_003774973.1| hypothetical protein Hsero_1552
           [Herbaspirillum seropedicae SmR1]
          Length = 182

 Score =  336 bits (861), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 154/181 (85%), Positives = 167/181 (92%)

Query: 1   MKIDRIHHVAYRCKDARETVLWYQKYLNMDFILAIAEDQVPSTKAPDPYMHIFLDAGQGN 60
           M I+RIHHVAYRCKDAR+TV WY KYLNM FILAIAEDQVPST+  DPYMH+FLDAGQGN
Sbjct: 2   MNIERIHHVAYRCKDARQTVEWYGKYLNMGFILAIAEDQVPSTRQADPYMHVFLDAGQGN 61

Query: 61  VLAFFEIPNSPPMGRDTNTPAWVQHIAFKVDSEATLREVMQRLQDDGIEVVGITDHTIFK 120
           VLAFFEIPNSPPMGRD NTPAWVQH+AFKVDSEATL+EVMQRLQ DGIEVVG+TDHTIFK
Sbjct: 62  VLAFFEIPNSPPMGRDANTPAWVQHLAFKVDSEATLKEVMQRLQADGIEVVGVTDHTIFK 121

Query: 121 SIYFFDPSGHRVELAADCASPQQLQRLDEVKWDMLDEWSRTRRAPKHAAWMHVQEFTAAG 180
           SIYFFDP+GHR+ELAADC +P+Q+QRLDEVKW ML+EWSRTRRAPKHAAWMH QEF A  
Sbjct: 122 SIYFFDPNGHRIELAADCGTPEQMQRLDEVKWAMLEEWSRTRRAPKHAAWMHEQEFAAPT 181

Query: 181 H 181
           H
Sbjct: 182 H 182


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,783
Number of extensions: 25233
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 102
Effective length of database: 1,245,805
Effective search space: 127072110
Effective search space used: 127072110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)