BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0136.p
         (513 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspiril...  1057   0.0  

>gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspirillum
           seropedicae SmR1]
          Length = 513

 Score = 1057 bits (2733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/513 (99%), Positives = 513/513 (100%)

Query: 1   MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60
           MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE
Sbjct: 1   MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60

Query: 61  GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120
           GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF
Sbjct: 61  GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120

Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180
           ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM
Sbjct: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180

Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240
           GAGWCPPGMLGIGIGGTAEKAMLMAK+VLMEDIDMYELLKRGPQNKTEELRIELYEKVNA
Sbjct: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240

Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300
           LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL
Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300

Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360
           SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK
Sbjct: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360

Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420
           GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER
Sbjct: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420

Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480
           GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV
Sbjct: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480

Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVTTA 513
           DANG+SVHNTGPAEWKEKIAQSVSLSKIPVTTA
Sbjct: 481 DANGVSVHNTGPAEWKEKIAQSVSLSKIPVTTA 513


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,593,901
Number of extensions: 66084
Number of successful extensions: 196
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 424
Effective length of database: 1,198,455
Effective search space: 508144920
Effective search space used: 508144920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)