BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0129.p
         (591 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein [Her...  1059   0.0  

>gi|300310867|ref|YP_003774959.1| outer membrane lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 588

 Score = 1059 bits (2739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/591 (86%), Positives = 548/591 (92%), Gaps = 3/591 (0%)

Query: 1   MTWTRSLAIAFLFCAADTAHAAYKVQIDAPKPVQSLLKDFLDISRYQDRDDISDEQLKFM 60
           M WTRSLAI  L+CAA+ A AAY+V I+APKPVQSLLKDFLD+SRYQDRDDISDEQLKFM
Sbjct: 1   MKWTRSLAITLLWCAAEPAIAAYQVDIEAPKPVQSLLKDFLDLSRYQDRDDISDEQLKFM 60

Query: 61  MDTAGDQVRELTSTEGYFTPVTKVSAQTEAGAEGKQAVRRITISVDPGPRTEISSAEVSV 120
           MDTAG+QVR+LT+TEGYFTPVTKVS ++ AG +G   VRRIT++VDPGPRT + SAE+SV
Sbjct: 61  MDTAGEQVRDLTATEGYFTPVTKVSEESAAGKDG---VRRITVTVDPGPRTLVESAEISV 117

Query: 121 TGAAARDDQATVARLREDWSLPVGQPFRQEDWNRAKNAGLEKLQQKKYAAARIASSEARV 180
           TG+AA  D A VA+LR DWSL  G+PFRQ+DW++AKNAGL  LQQKKYAAARIA SEAR+
Sbjct: 118 TGSAASQDAARVAQLRTDWSLSPGEPFRQQDWDKAKNAGLATLQQKKYAAARIADSEARI 177

Query: 181 DPDEHQADLAVRYDSGPAFTLGPLQITGTRRYPESIIRNVNPLTVGEPYDVNRLLALQRQ 240
            P   QADL+VRYDSGPAFTLG LQITGTRRYPESIIRNV+PL VGEPYDV+RLLALQRQ
Sbjct: 178 APQAQQADLSVRYDSGPAFTLGALQITGTRRYPESIIRNVSPLIVGEPYDVDRLLALQRQ 237

Query: 241 IQNTPYFSNAIVAIDDDPEHPEQTPVKVQVTEFPTQRVRAGVGYSTDTGAQVEGRYSHYN 300
           IQNTPYFSNAIVAIDDDP HP+QTPVKVQVTEFPTQR+R GVGY TDTGAQ EGRYSHYN
Sbjct: 238 IQNTPYFSNAIVAIDDDPAHPDQTPVKVQVTEFPTQRIRTGVGYGTDTGAQAEGRYSHYN 297

Query: 301 VFNKAYVFDSQLRLEQKRQYGVLSLAMPPDDKAFVNSINTSYDRTKLEGIDLRSQQVGFK 360
           VFN+AYVFDSQLRLEQKRQYG+LSLAMPPD KAFVNSINT+YDRT LEGIDLR+QQVG K
Sbjct: 298 VFNRAYVFDSQLRLEQKRQYGLLSLAMPPDSKAFVNSINTAYDRTTLEGIDLRTQQVGLK 357

Query: 361 RARNSENYDTTYSLTYYRDELSQEDGSTLPANTIVTPGKHRALVPGFAWSRRNVDDPIFP 420
           RARNS+NYDTTYSLTYYRDEL QE+G TLPANTIVTPGKHRALVPGFAWSRRNVD+PIFP
Sbjct: 358 RARNSDNYDTTYSLTYYRDELVQENGVTLPANTIVTPGKHRALVPGFAWSRRNVDNPIFP 417

Query: 421 RKGNLLTLEAGFALKGLLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGSAGAV 480
           R GNLLTLEAG ALKG+LTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAG AG+V
Sbjct: 418 RHGNLLTLEAGLALKGVLTDQSFSRLYGRFKQFVPVGKRDIVVLRAELGGVFTAGRAGSV 477

Query: 481 PPSLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSSEYQRWFSENWGAAVFYDVG 540
           P SLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGS+EYQRWFSENWGAAVFYD+G
Sbjct: 478 PASLLFRTGGNDSVRGYSYQSIGNEQNGTVYPTKYLAVGSTEYQRWFSENWGAAVFYDMG 537

Query: 541 AAADNWNNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF 591
           AAADNW+NKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF
Sbjct: 538 AAADNWSNKTFYHGVGTGARWRSPVGTLNLDLAYGIQKRQIRPHISLGIAF 588


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,901,470
Number of extensions: 81544
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 500
Effective length of database: 1,188,985
Effective search space: 594492500
Effective search space used: 594492500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)