BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0128.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbasp...   299   1e-82

>gi|300310866|ref|YP_003774958.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 1300

 Score =  299 bits (766), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 178/202 (88%)

Query: 16  THTESGARLLWNTAVKTLDGKLSGQLLGGTVADGLRLRDLHYQDEKRILDIDSVDARWHL 75
           T TESGARLLWNTAVKTL GKLSGQLLGGTVADGL LR +HYQD +RILDID +DA W L
Sbjct: 13  TQTESGARLLWNTAVKTLGGKLSGQLLGGTVADGLHLRAVHYQDGQRILDIDRLDASWRL 72

Query: 76  ALLQRRFSIDYLRVGKVRLNQQPSPSEPSSMPSSLEIPLALDIREISLASLSLTQGTSTT 135
           +LL+RRFS+ YLR G V+LNQQPSPSEPSS+P+SL +PLAL+I EISL   SLTQGTSTT
Sbjct: 73  SLLKRRFSLAYLRAGTVQLNQQPSPSEPSSLPASLSLPLALEIGEISLDKFSLTQGTSTT 132

Query: 136 ELSKLKLHGNSDGVQHTLVLDSLTTPFGDATALLHLNGKQPFAIGGGLELAGAYQYGESK 195
           ELSKL+LHG+SDGVQHTLVLDSL TP+G ATAL+HLNGK PF IGGGLEL G YQ+GE K
Sbjct: 133 ELSKLRLHGSSDGVQHTLVLDSLVTPYGQATALVHLNGKAPFDIGGGLELGGVYQHGEFK 192

Query: 196 EQYQLAAQLSGSLQELGIALTA 217
           EQYQLAAQLSGSLQELG+AL A
Sbjct: 193 EQYQLAAQLSGSLQELGVALKA 214


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 774,940
Number of extensions: 30921
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)