BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0126.p
         (949 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310866|ref|YP_003774958.1| signal peptide protein [Herbasp...  1559   0.0  

>gi|300310866|ref|YP_003774958.1| signal peptide protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1300

 Score = 1559 bits (4037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/949 (80%), Positives = 865/949 (91%), Gaps = 4/949 (0%)

Query: 1    VSDLDLNQLHRQMRPTRLSGPVDLTLAPDAQQVLLTLQDSTLKLHVDSVIGQDRVQLREA 60
            VS+LDL+Q+H Q+RPTRLSGPV+ TL PDA+Q+LLTLQDS L+LH+DS +  D V+LREA
Sbjct: 356  VSELDLSQIHHQVRPTRLSGPVEATLGPDARQLLLTLQDSALRLHLDSTLRADTVELREA 415

Query: 61   SLTAGKSRLETSGTLQTAAAMEYAFKGRLVDFDPTAVLQAVTPPPASTGKGRKRTAAAAS 120
            SLTAGKSRLE +G+++T  AM+YAFKGRLVDFDPTAVLQ VT P A++ +   +T AA  
Sbjct: 416  SLTAGKSRLEAAGSMKTVGAMDYAFKGRLVDFDPTAVLQTVTAPTAASARRGGKTVAA-- 473

Query: 121  KPVPARINMDFNAAGALSPELKLKLGFRINDSTYDALPMSGQGDINLAGMRLLPSRANVQ 180
              +PARIN+DFNAAG LSPEL+LKLGF I+DS+Y  LPM+G+GDI+LAGMRLLPS+A++Q
Sbjct: 474  --IPARINLDFNAAGLLSPELRLKLGFTIHDSSYGDLPMAGRGDIDLAGMRLLPSQAHLQ 531

Query: 181  IAGNTLDLDGSFGTARDKLKLKVDAPQLARLGYGLGGLLRVDGILSGTRERPNLLASFQA 240
            +AGNTLDL+GSFG A DKLKLK+DAPQLARLGYGL GLLR+DG L GTR+RP+L AS+QA
Sbjct: 532  VAGNTLDLNGSFGAANDKLKLKIDAPQLARLGYGLSGLLRLDGQLGGTRQRPSLQASYQA 591

Query: 241  EQLAFGPHKLHHLSGQSELHSNLAAGVASPDNRLALSLEGDGYSGPQAELARLSLKLDGT 300
            EQL FGPHKL HL+GQ+E+HSNLAAGVASP+NRLAL+LEGDGYSGPQAELA+L++KLDGT
Sbjct: 592  EQLGFGPHKLQHLAGQAEIHSNLAAGVASPENRLALTLEGDGYSGPQAELAQLAVKLDGT 651

Query: 301  YASHTLALQAKGKLADQVLDLNLAAHGKVTEKTRGNYGWAGSLDQFSNQGLPRIAMTSPL 360
            YA H+L+L+A GKL ++ L L LAAHG+VTEKTRG YGW GS+DQ SN G PRIAM  PL
Sbjct: 652  YAKHSLSLKANGKLLNRPLALTLAAHGQVTEKTRGQYGWNGSIDQLSNDGFPRIAMLHPL 711

Query: 361  TLDASAEGIEAGSTRIEIDRTALDLKRLSYRQGRLASAGQVRALDVGRVLELVQQFTGTP 420
             L AS E +EAGSTRIEIDRTALDL+ LS+RQGR+ASAG+VRALDVGR+LEL QQ     
Sbjct: 712  ALQASPEAVEAGSTRIEIDRTALDLRHLSWRQGRIASAGEVRALDVGRLLELAQQLGAAA 771

Query: 421  PPVKTDLVLDSEWDFNLAETASGYLQIARKSGDVRVTTSVGEAAMGLSELQLRSQFQGER 480
            PP+KTDLVLDS+WDF+LAE+A GY+QIAR+SGD+R+ TS GEA +GLSEL+LRS FQGE+
Sbjct: 772  PPMKTDLVLDSDWDFSLAESARGYVQIARQSGDLRLVTSNGEATLGLSELKLRSDFQGEQ 831

Query: 481  MNVTGRVNAARIGTLDLGGDIGLRRVDTLLALAPESPLNLKASLDVPELKRVGDLIGPQV 540
            M ++GRV+A+RIGTL LGG IGL+RVD LL LA  SPL L A L++PELKR+GDLIGPQV
Sbjct: 832  MRLSGRVDASRIGTLALGGQIGLQRVDQLLTLADGSPLALNARLELPELKRIGDLIGPQV 891

Query: 541  SLNGKLAASLNAGGTLAQPRLSGAINGDNLAVTEFDQGIQLKDGIVRIVMDSNVIELRQI 600
            SLNGKL+A LN  GTLAQP+LSGA+NGD+LAVT+FDQGIQLKDGIVRIVMDSNVI+LRQI
Sbjct: 892  SLNGKLSADLNVAGTLAQPKLSGAVNGDDLAVTQFDQGIQLKDGIVRIVMDSNVIDLRQI 951

Query: 601  EFHGGRGTLRAGGKIQLGADNPDLNATLTADHLELFASPDRQLMLSGEGKISNVNEQLRV 660
            EFHGGRGTLRAGGKIQLGADNPDLNATLTA+ LELFASPDR+LMLSG+GKISNVNEQL V
Sbjct: 952  EFHGGRGTLRAGGKIQLGADNPDLNATLTAEQLELFASPDRRLMLSGQGKISNVNEQLHV 1011

Query: 661  DGKFTVDRALFDLPKSSAPKLGDDVVIVSRSGKNRVGAAASSQQKLEAATEKPASKFAPV 720
            DGKFTVD ALFDLPKSSAPKLGDDVVI+SRSGKN+VG  ASS+Q+LEAATEKPASKFAP 
Sbjct: 1012 DGKFTVDHALFDLPKSSAPKLGDDVVIISRSGKNQVGGQASSKQRLEAATEKPASKFAPF 1071

Query: 721  INLAVDLGNDFRFRGSGADLRLRGDMNVRSEPLSPLRATGTINVAEGSYEAFGTKLNIER 780
            IN+AVDLGNDFRFRGSGADLRLRG+M VRSEPLSP+RA+GTINVAEGSYEAFGTKLNIER
Sbjct: 1072 INIAVDLGNDFRFRGSGADLRLRGEMAVRSEPLSPMRASGTINVAEGSYEAFGTKLNIER 1131

Query: 781  GIINFQGPIANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFG 840
            GIINFQGPIANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFG
Sbjct: 1132 GIINFQGPIANPNINILAMRRNQDVEAGVSVTGNANQPRVQLVSEPNVPDDEKLSWMMFG 1191

Query: 841  HGTDSSSIGQRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLTDDQVVNLGKAIT 900
            HGTD+SSIGQRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLT+DQVVNLGKAIT
Sbjct: 1192 HGTDNSSIGQRTASSQALALVGNMGGKRIAKDIGLDQFSIGSSESGLTNDQVVNLGKAIT 1251

Query: 901  EKITLGYEQSLQGAASVAKATWQISRRWSVVARAGTINGLNILFSRRYD 949
            EKITLGYEQSLQGAASVAKATWQISRRWSVVARAGTINGLNILF+RRYD
Sbjct: 1252 EKITLGYEQSLQGAASVAKATWQISRRWSVVARAGTINGLNILFNRRYD 1300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,940,210
Number of extensions: 129148
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 1
Length of query: 949
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 855
Effective length of database: 1,174,780
Effective search space: 1004436900
Effective search space used: 1004436900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 135 (56.6 bits)