BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0122.p (199 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310862|ref|YP_003774954.1| dipeptide/oligopeptide/nickel A... 206 7e-55 gi|300311171|ref|YP_003775263.1| dipeptide/oligopeptide/nickel A... 89 2e-19 gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel A... 86 2e-18 gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel A... 84 1e-17 >gi|300310862|ref|YP_003774954.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 206 bits (525), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 163/177 (92%), Positives = 168/177 (94%) Query: 2 HGTRLSLSLAVVSVLSAAIPGVLIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLAA 61 HG RLSLSLA++SVLSAAIPG LIGLLAAWCGGW ERVLAA ADAVLALPGLLLVLLLAA Sbjct: 81 HGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLVLLLAA 140 Query: 62 FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPAL 121 FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFG YIVR HLLPAL Sbjct: 141 FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCHLLPAL 200 Query: 122 LPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGAP 178 LPRL TL+RFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWL+ +P Sbjct: 201 LPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVASP 257 >gi|300311171|ref|YP_003775263.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 310 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 97/192 (50%) Query: 1 VHGTRLSLSLAVVSVLSAAIPGVLIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLA 60 V GTR+SL+ SV A+ G + GLLA + GW +R+ D + A PG+LL + + Sbjct: 104 VMGTRISLAAGFFSVAIGAVIGTVFGLLAGYYEGWWDRITMRICDVLFAFPGILLAIGIV 163 Query: 61 AFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPA 120 A GG + + +S+ + R+VR + L +EA+R +G I+ +H+ P Sbjct: 164 AILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLTYIEATRSIGASDMTIMWKHIFPG 223 Query: 121 LLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGAPVG 180 + + + +++ + L F+G+G Q PTPE G+M+ E +P + P Sbjct: 224 TISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEWGLMLNEARADMVTSPHVALVPSI 283 Query: 181 VLFLTLLGLLLL 192 +FLT+L LL Sbjct: 284 AIFLTVLAFNLL 295 >gi|300310894|ref|YP_003774986.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 320 Score = 85.5 bits (210), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 89/166 (53%) Query: 2 HGTRLSLSLAVVSVLSAAIPGVLIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLAA 61 +G R+S+ + V S L A + G LIGLLAA+ GG ++ +L FAD VL+ P +L+ +L+ A Sbjct: 115 YGLRISVGIGVGSALIAGVIGTLIGLLAAYAGGKLDTLLMRFADLVLSFPSILVAMLILA 174 Query: 62 FAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPAL 121 + G + + + + W Y R R + + VEA+R L I+ RH+LP Sbjct: 175 YVGKGIFNVMATLVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNC 234 Query: 122 LPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPY 167 LP L + +A A+ + L F+G+G+ P LG+++ Y Sbjct: 235 LPPLIVIGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQY 280 >gi|300312479|ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 305 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 101/178 (56%) Query: 1 VHGTRLSLSLAVVSVLSAAIPGVLIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLA 60 ++G R+SL++ + + L + + G +G+LA + GG + V++ LA+P +L+ L +A Sbjct: 100 IYGARVSLTIGLAAALISGLIGTTLGVLAGYFGGRTDAVISYLITTRLAMPVVLVALAMA 159 Query: 61 AFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPA 120 + G + V + L LW + V R+A++ L + + A++ +G YI+ R +LP Sbjct: 160 SLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRDAEFIAAAKAIGASTPYILLREILPN 219 Query: 121 LLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGAP 178 ++ L ++ +A A+L + L F+G+G+QPPTP G+M+ E Y PW++ P Sbjct: 220 IMGALIVVVTLEMAHAILLEATLSFLGLGVQPPTPSWGLMVAEGKTYMFFKPWVIVIP 277 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.329 0.146 0.454 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 481,930 Number of extensions: 15363 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 6 Length of query: 199 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 118 Effective length of database: 1,236,335 Effective search space: 145887530 Effective search space used: 145887530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)