BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0119.p (513 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter perip... 816 0.0 gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter perip... 98 2e-21 gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter perip... 79 1e-15 >gi|300310860|ref|YP_003774952.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/523 (80%), Positives = 455/523 (86%), Gaps = 11/523 (2%) Query: 1 LLALLAASPWPLAWAHGDEAGPHSHA-ITQTGSDVLTVVGPWELTGLDPSRSGYMFARME 59 L A L+ASPW A AHGDEAG H+H I G D+LTVVGPWELTGLDP+RSGYMFARME Sbjct: 21 LAATLSASPWHAALAHGDEAG-HAHGDIAHAGKDMLTVVGPWELTGLDPTRSGYMFARME 79 Query: 60 VLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGLPRARRYHDGSEVTPASILACLQRAA 119 VL+TLLEVDDAGQLQP +A+ W VSADGLQWRF L RYHDGS +TPASILACLQRA Sbjct: 80 VLETLLEVDDAGQLQPSVASAWSVSADGLQWRFVLRSGLRYHDGSALTPASILACLQRAQ 139 Query: 120 VRPGVLQLAGITGMAVQQSELVLSLRQPFGPLPYLLTHYSTQILAPASFDAQGNVVAILG 179 RPGVL+LA I + V+ LV+ LR+PFGPLPYLLTHY+TQILAPASFDAQGNVVAI+G Sbjct: 140 ARPGVLRLADIAALRVEGQTLVVVLRRPFGPLPYLLTHYTTQILAPASFDAQGNVVAIIG 199 Query: 180 TGPFRITSISLPQQFDVERAEAAP---------GRAVQRARYISVSRAETRTLLVQSGQA 230 +GPFRI SI+LPQQF+VER + G+ VQRARYISVSRAETRTLLVQSGQA Sbjct: 200 SGPFRIRSIALPQQFEVERVAGSVSGSGAGSDVGKVVQRARYISVSRAETRTLLVQSGQA 259 Query: 231 DLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNAGHPFLADVRVRRAIALCIEREGI 290 DLAFSLDPPSIRALQDSPRA LLSAMLPRTTLLKLNAGHP LADVRVRRAI+LCIEREGI Sbjct: 260 DLAFSLDPPSIRALQDSPRASLLSAMLPRTTLLKLNAGHPLLADVRVRRAISLCIEREGI 319 Query: 291 ARALLRDADLGATQLLPPSLARWHDTRLPPLHTDLKQARRLLEEAGWRLGADGTRWKDGQ 350 ARALLRD DLGATQL PPSLARWHD L PL T+L+QAR LL++AGWR G+DG R +DGQ Sbjct: 320 ARALLRDPDLGATQLFPPSLARWHDAALAPLRTNLQQARSLLDQAGWRPGSDGVRRRDGQ 379 Query: 351 KLQLTLTTFVDRPELPLIATALQEEMRQIGIAVRVTIGNSSDIPAGHRSGQLQMALAARN 410 ++ L LTTFVDRPELPLIATALQEEMRQIG+AVRV IGNSSDIPAGHRSGQLQMALAARN Sbjct: 380 RMALNLTTFVDRPELPLIATALQEEMRQIGMAVRVVIGNSSDIPAGHRSGQLQMALAARN 439 Query: 411 YGNLPDPVASLLQDFGPQGGDWGAMGWHNQEVPALLAKLAATPAGEGDSGRAERARIVAV 470 YGNLPDPVASLLQDFGPQGGDWGAMGW NQEVPALLA+LAATPA G AERARIVA+ Sbjct: 440 YGNLPDPVASLLQDFGPQGGDWGAMGWDNQEVPALLARLAATPADAAAKGNAERARIVAL 499 Query: 471 LQEQLPVIPVVWYRQTCAVSRRLRGASIDPFERSYRIASLQWT 513 LQEQLPVIPVVWYRQTCAVSRR+RGASIDPFERSYRI+SLQWT Sbjct: 500 LQEQLPVIPVVWYRQTCAVSRRVRGASIDPFERSYRISSLQWT 542 >gi|300310897|ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 123/491 (25%), Positives = 212/491 (43%), Gaps = 59/491 (12%) Query: 43 LTGLDPSRSGYMFARMEVLQ--TLLEVDDAGQLQPGLATGWQVSADGLQWRFGLPRARRY 100 L+ LDP + + R L LL +D +L PGLA W+ + D W F L ++ Sbjct: 39 LSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWK-NIDPKTWEFKLRPNVKW 97 Query: 101 HDGSEVTPASILACLQRAAVRPG-VLQLAGI--TGMAVQQSE---LVLSLRQPFGPLPYL 154 DG T ++ QRA PG V AG T +V + LV+ P LP Sbjct: 98 QDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLN 157 Query: 155 LTHY---STQILAPASFDAQGNVVAILGTGPFRITSISLPQQFDVERAEAA-PGRAV-QR 209 L S I ++ + + A++GTGP++ S + + ++R + G+ + ++ Sbjct: 158 LASVHIVSKHIGEKSTTENYNSGAAVIGTGPYKFVSYTPGDRVVMQRNDDYWNGKPLWEK 217 Query: 210 ARYISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLK--LNA 267 Y ++ RT + SG D+ + + L+ SP + R L++ + Sbjct: 218 VNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHQ 277 Query: 268 G-HPF-------------LADVRVRRAIALCIEREGIARALLRDADLGATQLLPPSLARW 313 G PF L DVRVRRA++L I R+ + +L+ A A Q +P Sbjct: 278 GPSPFITDNNGKQLDKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQWMPADTFG- 336 Query: 314 HDTRLPPLHTDLKQARRLLEEAGWRLGADGTRWKDGQKLQLTLTTFVDR-PELPLIATAL 372 ++ + + D QA++LL +AG+ G +LT+ DR P+ P A+ Sbjct: 337 YNPEIKNIPFDAAQAKKLLADAGFPDG-----------FKLTIHVPNDRYPQAPETMQAV 385 Query: 373 QEEMRQIGIAVRVTIGNSSDIP---AGHRSGQLQMALAARNYGN----LPDPVASLLQDF 425 + +IGI +V + +P R+ + + A++ +GN + ++L Sbjct: 386 AQFWTRIGIKTQVEV-----LPWAAYSSRANKNEFAVSVLAWGNGTGEASYALVNVLGSV 440 Query: 426 GPQGGDWGAMGWHNQEVPALLAKLAATPAGEGDSGRAERAR--IVAVLQEQLPVIPVVWY 483 P+ G GA W++ PA+ LA + A E D+ + E + E++ VIP+ Y Sbjct: 441 DPKKG-IGASNWNHYSSPAVDKALADSTA-EFDAAKREAILRGAAKTVSEEVGVIPLYHY 498 Query: 484 RQTCAVSRRLR 494 + A + L+ Sbjct: 499 QNIWAAKKGLK 509 >gi|300311169|ref|YP_003775261.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 523 Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/358 (22%), Positives = 147/358 (41%), Gaps = 29/358 (8%) Query: 43 LTGLDPSRSGYMFA---RMEVLQTLLEVDDAGQLQPGLATGWQVSADGLQWRFGLPRARR 99 T LDP + + Q L D +L P LA G+ VS DGL++ L + + Sbjct: 46 FTTLDPYDANDTLSLSMAKSFYQGLFGFDKDMKLIPVLAEGYLVSKDGLEYTIRLKQGVK 105 Query: 100 YHDGSEVTPASILACLQRAAVRPGVLQLAGITGMAVQQSELV------LSLRQPFGPLPY 153 + DG+ ++ A R L+ + + ++E++ + L++PF Sbjct: 106 FQDGTVFKADAVKAVFDRVTNPDNKLKRYNLFNR-IAKTEILNDYTVKVVLKEPFSAFIN 164 Query: 154 LLTHYSTQILAPASFDAQGNV-VAI--LGTGPFRITSISLPQQFDVERAEA--APGR-AV 207 +L H S +++P + GN +A +GTGPF+ V + + PG V Sbjct: 165 VLAHPSAVMISPTALKQYGNKDIAFHPVGTGPFKFVEWKQTDYVKVAKFDGYWKPGYPKV 224 Query: 208 QRARYISVSRAETRTLLVQSGQADLAFSLDPPSIRALQDSPRAVLLSAMLPRTTLLKLNA 267 + V R+ ++Q+G+A + L L+ +++A + +N Sbjct: 225 DEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKSKSNLDVVAAPSIIQRYMSMNT 284 Query: 268 GHPFLADVRVRRAIALCIEREGIARALLRDADLGATQLLPPSLARWHDTRLPPLHTDLKQ 327 + +VR AI I ++ + + + ++P + + T P D+K+ Sbjct: 285 KQKPFDNPKVREAINYAINKQALVKVAFNGYAVPMDGVVPQGVDYAYKTG--PWPYDVKK 342 Query: 328 ARRLLEEAGWRLGADGTRWKDGQKLQLTLTTFVDRPELPLIATALQEEMRQIGIAVRV 385 A+ LL EAG+ G + W T +T V I LQ+++ Q+GI ++ Sbjct: 343 AKALLAEAGYPNGFETELWS-----AYTHSTAVK------IVQFLQQQLAQVGIKAKI 389 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,637,593 Number of extensions: 70709 Number of successful extensions: 248 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 3 Length of query: 513 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 424 Effective length of database: 1,198,455 Effective search space: 508144920 Effective search space used: 508144920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)