BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0113.p (1078 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 2117 0.0 gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump tr... 1026 0.0 gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump pr... 1004 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 397 e-111 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 392 e-110 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 2117 bits (5484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1048/1078 (97%), Positives = 1069/1078 (99%) Query: 1 MNISLPFIKRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDYPTISISASLPGASPETMA 60 MNISLPFI+RPIATTLLTIGIALAG+VAFRLLPVSPLPQVDYPTISISAS+PGASPETMA Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDL+RDIDGAARDVQAALNAARNLLP Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS Sbjct: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDDGRNWQIYANDQAKTAAE 240 SQPAVRIELNPTALNKYGIG+ADVRTAVAATNANRPKGLLED RNWQIYANDQAKTAAE Sbjct: 181 SQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQAKTAAE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIETVDNV 300 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANII+TVDNV Sbjct: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNV 300 Query: 301 RALLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNARATL 360 R LLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTL+LSVALVIMVVFLFLRNARATL Sbjct: 301 RELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATL 360 Query: 361 IPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRYIEAGMKP 420 IPAVAVPVSLIGTFG+MYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISR+IE+GMKP Sbjct: 361 IPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRHIESGMKP 420 Query: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT Sbjct: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 Query: 481 TTPMMCAQLLRHDPEGDAARRERRHPWLQKIADQSAAIFEDMLLAYERTLAWALRAAPLM 540 TTPMMCAQLLRHDP D ARR+RRHPWLQKIADQSAAIFEDMLLAY+RTLAWALRAAPLM Sbjct: 481 TTPMMCAQLLRHDPAADEARRQRRHPWLQKIADQSAAIFEDMLLAYQRTLAWALRAAPLM 540 Query: 541 MLILLGTIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVKAD 600 MLILL TIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIV+AD Sbjct: 541 MLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVRAD 600 Query: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKIVARLRIKTAKVAGARVFLVPVQD 660 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADK+VARLRIKTAKVAGARVFLVPVQD Sbjct: 601 PAVSDVVAFTGGQRRNGGFMYVTLKPLSERKDSADKVVARLRIKTAKVAGARVFLVPVQD 660 Query: 661 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID Sbjct: 661 IRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQTTLTID 720 Query: 721 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS Sbjct: 721 RETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLRDTYVS 780 Query: 781 LAGSSNLSPTTSSLSTPPALSAAGKLNANTGLAQTISTAASTQIPLAAFSRFEPTTTALS 840 LAGSSNLSPTTSSLSTPPALSA+GKLNANTGLAQTISTA S QIPLAAFSRFEPTTT+LS Sbjct: 781 LAGSSNLSPTTSSLSTPPALSASGKLNANTGLAQTISTAPSRQIPLAAFSRFEPTTTSLS 840 Query: 841 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSVLGTFAGTANAFQASTSSQ 900 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPT+VLGTFAGTANAFQ+STSSQ Sbjct: 841 VSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTFAGTANAFQSSTSSQ 900 Query: 901 PILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960 P+LILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL Sbjct: 901 PLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIALIGVIL 960 Query: 961 LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020 LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH Sbjct: 961 LIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGH 1020 Query: 1021 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSAWSRRRFGRKNKTETSAA 1078 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLS+WS+RRFGRKNKTETSAA Sbjct: 1021 GDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSKRRFGRKNKTETSAA 1078 >gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 548/1075 (50%), Positives = 732/1075 (68%), Gaps = 52/1075 (4%) Query: 1 MNISLPFIKRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDYPTISISASLPGASPETMA 60 MN S FI RP+AT+LL + I L G+VA+RLLP+S LP+VDYPTI + PGASP+ M Sbjct: 1 MNPSRQFILRPVATSLLMLAILLVGIVAYRLLPLSALPEVDYPTIQVVTLYPGASPDVMT 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 ++V PLER G + G+ +M+STSS ++ ITLQF+L+ +D A ++VQAA+NA NLLP Sbjct: 61 SSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAGSNLLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 + +P P Y KVNPAD PI+ LA+TS+TM ++ D D+ +AQK+SQ+ GVG VS+ G Sbjct: 121 SDLPMPPVYSKVNPADTPIITLAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGLVSLSGG 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDDGRNWQIYANDQAKTAAE 240 +PAVR++LNP A+ G+ DVRTA+ N N+ KG + R I ANDQ ++A E Sbjct: 181 QRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQLRSADE 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIETVDNV 300 Y LI++Y+NG P+RV DVA+V D +VR +N +P+V++ I RQPGAN+I VD++ Sbjct: 241 YRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSI 300 Query: 301 RALLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNARATL 360 + +LPQLQAS+P AID+ ++ DRT TIRAS+ + +F L+LSVALV+MV+F+FLRN AT+ Sbjct: 301 KKILPQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLRNVPATI 360 Query: 361 IPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRYIEAGMKP 420 IP+VAVP+SL+GTF IMYLAGFS++NL+LMALTIATGFVVDDAIV++ENISRYIE GMKP Sbjct: 361 IPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENISRYIEEGMKP 420 Query: 421 YKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLT 480 +AAL GA ++GFT++S++ SLIAV IP+L M +VGRLF EFA+TL+V+IL+S VVSLT Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480 Query: 481 TTPMMCAQLLRHDPEGDAARRERRHPWLQKIADQSAAIFEDMLLAYERTLAWALRAAPLM 540 TPMMCA+LLRH P E + W + Q F+ ++ Y L W L L Sbjct: 481 LTPMMCARLLRHQP-------EEQQGWFYHKSQQ---FFDRIIARYGVMLQWVLARQKLT 530 Query: 541 MLILLGTIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNEFIDIVKAD 600 +L+ T+ L V LY +PKGFFP QDTG + G Q+ISF AM K + +V D Sbjct: 531 LLVAAATLGLTVLLYVFVPKGFFPLQDTGVIQGISEATQSISFSAMGEKQQQLAKVVLQD 590 Query: 601 PAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKDSADKIVARLRIK-TAKVAGARVFL 655 PAV + +F G N G M + LKP R+ SA ++ RL+ K A+V G +++ Sbjct: 591 PAVESLTSFIGVDGTNATLNSGRMLINLKPHDVREVSATDVIRRLQGKLAAEVPGITLYM 650 Query: 656 VPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELEDISTDQQDNGLQT 715 PVQD+ I S +QY+++L+ D +L W PK+ L EL D++T+ QD GLQ Sbjct: 651 QPVQDLTIEDSVSRTQYQFTLEDADPAVLSTWVPKLIARLQQQSELADVATNLQDQGLQA 710 Query: 716 TLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEAAPQYWQSPETLR 775 + IDR A R G+T ID+ L + FGQR ISTIY+ NQY VVME P++ P L Sbjct: 711 YIEIDRNAASRLGITTAAIDNALYNAFGQRLISTIYTQSNQYRVVMEVKPEFQHGPAALD 770 Query: 776 DTYVSLAGSSNLSPTTSSLSTPPALSAAGKLNANTGLAQTISTAASTQIPLAAFSRFEPT 835 Y+ +G GK +PL++ + Sbjct: 771 SIYLVTSG-------------------GGK------------------VPLSSIATVTER 793 Query: 836 TTALSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSVLGTFAGTANAFQA 895 T L V+H GQF A+T+SFNLA+G SL +A AI A ++G+P S + F G A AFQA Sbjct: 794 TAPLVVNHIGQFPAATVSFNLAKGASLGEAVKAIKAAEEEIGMPASTVTNFQGAALAFQA 853 Query: 896 STSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVTGTDFSLIAL 955 S S+ LIL A++ +YIVLG+LYES IHPITI+STLPSAGVGALL+LM++GTD +I + Sbjct: 854 SLSNTLWLILAAIVTMYIVLGVLYESYIHPITILSTLPSAGVGALLSLMISGTDLGIIGI 913 Query: 956 IGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPIMMTTMAALLGAIP 1015 IG+ILLIGIVKKNAIMM+DFA++AER+ G SPR+AI++AC LRFRPI+MTTMAALLGA+P Sbjct: 914 IGIILLIGIVKKNAIMMIDFALEAERHEGKSPREAIYQACLLRFRPILMTTMAALLGALP 973 Query: 1016 LAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSAWSRRRFGRK 1070 L +G G G+ELRQPLGI++VGGL+VSQ+LTL+TTPV+YL + L R RFG++ Sbjct: 974 LMLGTGVGSELRQPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRRLRARFGQR 1028 >gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1084 (47%), Positives = 737/1084 (67%), Gaps = 68/1084 (6%) Query: 1 MNISLPFIKRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDYPTISISASLPGASPETMA 60 M++S FIKRPI TTLL I I L G+ + LLPV+PLPQVD+PTI ++A LPG SPETMA Sbjct: 1 MSVSAAFIKRPIGTTLLAIAILLVGVAVWPLLPVAPLPQVDFPTIQVTAQLPGGSPETMA 60 Query: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLP 120 + VA PLER IAG+++MTS S+ ST+ITLQFDLNR+ID AA DVQAA+NA+ LP Sbjct: 61 SNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINASTGQLP 120 Query: 121 TGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGS 180 +P+ PT+RK+NPAD+PI+I+++ S+ + + D AD+I+AQ++SQ+ GVG V+V G Sbjct: 121 ANLPNPPTFRKINPADSPIMIMSVQSEALPLTVVNDYADNILAQQISQISGVGLVNVNGQ 180 Query: 181 SQPAVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLLEDDGRNWQIYANDQAKTAAE 240 +PAVRI+++P L G+ D+R +A T N+PKG ++ + + +Y NDQ A + Sbjct: 181 QKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTNDQLLKAEQ 240 Query: 241 YAPLIVSYRNGTPVRVQDVAEVRDS-------------VADVRNAGSSNGKPSVLIIINR 287 + +++++RNG P+RV+D+ D A+ + +NG+ S+++ I + Sbjct: 241 WNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADHSITNGR-SIVLAITK 299 Query: 288 QPGANIIETVDNVRALLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIM 347 QPGAN+IETV ++A +P+L+A+IP+AI + ++DRT TIRAS+++ EFTL+L++ALV+M Sbjct: 300 QPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVEDVEFTLVLTIALVVM 359 Query: 348 VVFLFLRNARATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVL 407 V+F+FLRN ATLIP+V VP++++GT G+MY+ G+SLDNLSLMALTIA GFVVDDAIV+L Sbjct: 360 VIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAVGFVVDDAIVML 419 Query: 408 ENISRYIEAGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITL 467 ENI RY+E GM P +AAL GA E+GFT++S+S+SL+AVFIP+L+M GIVGRLFREFA+T+ Sbjct: 420 ENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMGGIVGRLFREFAVTV 479 Query: 468 SVAILVSLVVSLTTTPMMCAQLLRHDPEGDAARRERRHPWLQKIADQSAAIFEDMLLAYE 527 ++ I VS+++SLT TPM+C++ L+++ R + + W ++ F+ ML Y+ Sbjct: 480 TLTIAVSVIISLTLTPMLCSRFLKNE---HGQRHGKLYQWFERC-------FDAMLAGYK 529 Query: 528 RTLAWALRAAPLMMLILLGTIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMR 587 R L ++ + ++ + T+AL L+ IPKGFFPQQD G +VG Q S AM Sbjct: 530 RGLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSSAAMH 589 Query: 588 TKLNEFIDIVKADPAVSDVVAFT---GGQRRNGGFMYVTLKPLSE-RKDSADKIVARLRI 643 +L + ++V+ DP DV+ F G N G ++ LKP + R +AD+I+ARLR Sbjct: 590 ERLLKVAEVVRQDP---DVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLRP 646 Query: 644 KTAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVGLLRIWEPKIRLALSNLKELED 703 K A++ G +F+ QDI +G R S +QY+Y++ D+ L +W P++ L +L D Sbjct: 647 KVARIEGVNLFMQASQDINVGGRLSRTQYQYTITDTDLDELNVWAPRMLERFRQLPQLTD 706 Query: 704 ISTDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYHVVMEA 763 +++DQQ+ +TIDR A G++P LID+T+ D GQRQ++ ++ +N Y V++E Sbjct: 707 VASDQQNQAAAAVITIDRARASSFGISPSLIDATIYDAIGQRQVAQYFTQINSYRVILEV 766 Query: 764 APQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSAAGKLNANTGLAQTISTAASTQ 823 P + P Y++ SP T Q Sbjct: 767 TPALQKDPALFDKLYLT-------SPLTGQ-----------------------------Q 790 Query: 824 IPLAAFSRFEPTTTA-LSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTSV 882 +PL+ F + + + T+ LS+SH+ QF A T+SFNLA+GVSL +A I + Q+GVP ++ Sbjct: 791 VPLSTFVKIDTSKTSYLSISHQSQFPAVTISFNLAKGVSLGEAVDVIQKTKDQMGVPQTL 850 Query: 883 LGTFAGTANAFQASTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLA 942 +G F GTA AF S SSQP LI AL+AVYIVLG+LYES IHP+TI+STLPSAGVGALL Sbjct: 851 VGNFQGTAKAFGDSLSSQPYLIAAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALLI 910 Query: 943 LMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLRFRPI 1002 LM G D S+IALIG+ILLIGIVKKN IMM+DFA+ AER++GM P AI++AC LRFRPI Sbjct: 911 LMAGGYDLSVIALIGIILLIGIVKKNGIMMIDFALTAERSQGMKPEQAIYQACLLRFRPI 970 Query: 1003 MMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSAW 1062 MMTTM ALL +PL +GHG G+ELR+PLG ++VGGL++SQ LTL+TTPVVYLY++R W Sbjct: 971 MMTTMCALLSGLPLMLGHGAGSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHYW 1030 Query: 1063 SRRR 1066 R+ Sbjct: 1031 YMRK 1034 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust. Identities = 323/1093 (29%), Positives = 552/1093 (50%), Gaps = 92/1093 (8%) Query: 7 FIKRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDYPTISISASLPGASPETMAATVATP 66 FI RPI +L I + LAG+V+ LP++ P + P I+I+A+ PGAS +T+ TV Sbjct: 5 FIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDTVTQI 64 Query: 67 LERAMGAIAGVTEMTSTS-SQNSTRITLQFDLNRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + ++ M STS S S ITL F+ + D A VQ L+ A LLP+ + Sbjct: 65 IEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPSEVQQ 124 Query: 126 NPTYRKVNPADAPILILAMTSD--TMTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQP 183 A + +LA TS+ +M+ + D + V +S+V GVG ++ GS Q Sbjct: 125 QGI-TVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS-QY 182 Query: 184 AVRIELNPTALNKYGIGSADVRTAVAATNANRPKGLL------EDDGRNWQIYANDQAKT 237 A+RI L+P LN YG+ DV+ A+ A NA G L E+ N I A + +T Sbjct: 183 AMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRLRT 242 Query: 238 AAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIET 296 A ++ +++ + G V+++DVA + + G NGKP+ + I GAN ++T Sbjct: 243 ADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDT 302 Query: 297 VDNVRALLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFLRNA 356 V + + +L+ P+ + ++ D TP +R S++E TL+ +V LV +V++LFL+N Sbjct: 303 VKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNF 362 Query: 357 RATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRYI-E 415 RATLIP +AVPV L+GTFG++ + GF+++ L++ A+ +A G +VDDAIVV+EN+ R + E Sbjct: 363 RATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 422 Query: 416 AGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSL 475 G+ P +A ++ ++ +++ L AVF+P+ G G ++R+F+IT+ A+ +S+ Sbjct: 423 EGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSV 482 Query: 476 VVSLTTTPMMCAQLLRHDPEGDAARRERRHPWLQKIADQSAAIFEDMLLAYERTLAWALR 535 +V+L TP +CA LL+ +G A W + D+S ++ ++ + W Sbjct: 483 LVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQG-IVRHMLGRGWRYM 541 Query: 536 AAPLMMLILLGTIALNVYLYKAIPKGFFPQQDTGRLVGGIR----GDQAISFQAMRTKLN 591 AA ++L AL V + +P GF P +D G L ++ +A + + +R Sbjct: 542 AAYAVLL------ALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQ 595 Query: 592 EFIDIVKADPAVSDVVAFTG----GQRRNGGFMYVTLKPLSERKD---SADKIVARLRIK 644 F +V AVS V A +G G +N GF ++ LKP ERK S + A+ Sbjct: 596 HF--LVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAA 653 Query: 645 TAKVAGARVF-LVPVQDIRIGARQSDSQYEYSLKSD-DVGLLRIWEPKIRLALSNLKELE 702 A + ARVF P +G + + ++ LK + ++G + + + +L +++ Sbjct: 654 FANIRDARVFAFAPPAVSELG---NATGFDLMLKDEANLGHAALMQARNQLLGELMQDKR 710 Query: 703 DISTDQQDNGLQTT----LTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYH 758 ++ + NGL+ T L++D + A GV I+ T++ +G ++ Sbjct: 711 LVAV--RPNGLEDTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKK 768 Query: 759 VVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSAAGKLNANTGLAQTIST 818 V+++ QY P + YV Sbjct: 769 VMLQGDAQYRMLPSDVDRWYV-------------------------------------RN 791 Query: 819 AASTQIPLAAFSRFEPTTTALSVS-HEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLG 877 +A T +P +AFS T+ + + + G L L S +A A ++ A+A++ Sbjct: 792 SAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAMAIVEAALAKM- 850 Query: 878 VPTSVLGTFAGTANAFQASTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGV 937 P + + G + +AS+ IL ++L V++ L LYES P ++I +P Sbjct: 851 -PPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVILVVPLGVF 909 Query: 938 GALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKL 997 GALL M+T + +G++ IG+ KNAI++V+FA D + G S +A EA ++ Sbjct: 910 GALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEH-GKSLVEATMEAVRM 968 Query: 998 RFRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYME 1057 R RPI+MT++A +LG +P+ +G G GA + LG +++GG++ +L ++ P+ ++ + Sbjct: 969 RLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVPLFFVIIM 1028 Query: 1058 RLSAWSRRRFGRK 1070 L FGRK Sbjct: 1029 TL-------FGRK 1034 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust. Identities = 321/1100 (29%), Positives = 546/1100 (49%), Gaps = 87/1100 (7%) Query: 7 FIKRPIATTLLTIGIALAGMVAFRLLPVSPLPQVDYPTISISASLPGASPETMAATVATP 66 FI RPI ++ I I L GM++ R L + P + P ++I A+ GAS +T+ +V Sbjct: 5 FIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQV 64 Query: 67 LERAMGAIAGVTEMTSTSSQNSTR-ITLQFDLNRDIDGAARDVQAALNAARNLLPTGMPS 125 +E+ M + + M+++SS + ++L F + D A VQ L LP + + Sbjct: 65 IEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQN 124 Query: 126 NPTYRKVNPADAPIL-ILAMTSDT--MTQGQMYDAADSIVAQKLSQVRGVGQVSVGGSSQ 182 N V A IL +L++TSD +T + D S + ++S+V GVG V+ G++ Sbjct: 125 NGV--TVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNY 182 Query: 183 PAVRIELNPTALNKYGIGSADVRTAVAATNANRPKG----LLEDDGR--NWQIYANDQAK 236 A+RI ++P L KY + +D+ +A+ A N G L G+ N I A + Sbjct: 183 -AMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLT 241 Query: 237 TAAEYAPLIV-SYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIE 295 T E+ +IV S +G+ V++ DVA V + A NGKPS + I GAN + Sbjct: 242 TPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANALA 301 Query: 296 TVDNVRALLPQLQASIPSAIDMK--VVLDRTPTIRASLKETEFTLMLSVALVIMVVFLFL 353 T D V+ L +L+ P+++ +K + D TP +R SL+E TL+ ++ LV+++++LFL Sbjct: 302 TADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFL 361 Query: 354 RNARATLIPAVAVPVSLIGTFGIMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRY 413 +N RAT IPA+ VPV L+GTFGI+ + G+S++ L++ + +A G +VDDAIVV+EN+ R Sbjct: 362 QNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERL 421 Query: 414 I-EAGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAIL 472 + E + P +A +E+ ++ +++ L AVFIP+ G G ++R+F+IT+ A+ Sbjct: 422 MSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMA 481 Query: 473 VSLVVSLTTTPMMCAQLLRHDPEGDAARRERRHPWLQKIADQSAAIFEDMLLAYERTLAW 532 +S++V+LT TP +CA LL+ G ++ R W + D+SA ++ + + Sbjct: 482 LSVMVALTLTPALCATLLKPHAGGH-VQQGRFFTWFNRSFDRSATRYQGGVAGLLK---- 536 Query: 533 ALRAAPLMMLILLGTIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAMRTKLNE 592 R +++ L +A+ V L+ +P F P++D G L+ I+ + + T + Sbjct: 537 --RGKRGLLMYALIAVAMAV-LFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKT 593 Query: 593 FIDIVKADP-AVSDVVAF----TGGQRRNGGFMYVTLKPLSERK---DSADKIVARLRIK 644 + P +V V+A GG +NG ++ LK +R SA ++V R Sbjct: 594 VQEYFMNKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANAD 653 Query: 645 TAKVAGARVFLVPVQDIRIGARQSDSQYEYSLKSDDVG------LLRIWEPKIRLALSNL 698 +K+ GARVFL+ +R G QS + L+ DVG LL+ + ++LA SN Sbjct: 654 LSKIRGARVFLMNPPAVR-GLGQSSG---FDLELKDVGGVGHDALLQARDQFLQLARSN- 708 Query: 699 KELEDISTDQQDNGLQTTLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYSGMNQYH 758 L ++ T D+ Q + ID A + I++TL+ G ++ S Sbjct: 709 ALLANVRTTGLDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKK 768 Query: 759 VVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSAAGKLNANTGLAQTIST 818 V ++ + + L YV Sbjct: 769 VYVQGDSAFRMQADDLNRWYV-------------------------------------RN 791 Query: 819 AASTQIPLAAFSRFEPTTTALSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGV 878 AAS +P AAF + T + + + A GVS A A +++ +AQL Sbjct: 792 AASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEKLVAQL-- 849 Query: 879 PTSVLGTFAGTANAFQASTSSQPILILTALLAVYIVLGILYESLIHPITIISTLPSAGVG 938 P + + G++ + S + P+L ++L V++ L LYES P +I +P +G Sbjct: 850 PAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIG 909 Query: 939 ALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGMSPRDAIFEACKLR 998 +L + G + +G++ +G+ KNAI++V+FA + G S +A EA +LR Sbjct: 910 TVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHES-GKSLWEATLEAVQLR 968 Query: 999 FRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMER 1058 RPI+MT++A + G +PLA+ G G+ R+ +G ++GG++ + LL ++ P+ Y Y+ Sbjct: 969 LRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFY-YL-- 1025 Query: 1059 LSAWSRRRFGRKNKTETSAA 1078 + AW RR RK + + A Sbjct: 1026 IGAWLDRRAARKPRQDDDHA 1045 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,882,959 Number of extensions: 113724 Number of successful extensions: 588 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 529 Number of HSP's successfully gapped: 23 Length of query: 1078 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 983 Effective length of database: 1,170,045 Effective search space: 1150154235 Effective search space used: 1150154235 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)