BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0109.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519...   311   1e-86

>gi|300310850|ref|YP_003774942.1| hypothetical protein Hsero_1519
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  311 bits (798), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/181 (91%), Positives = 171/181 (94%), Gaps = 3/181 (1%)

Query: 1   MLTMKNRILAGIAAVSISAVTLSAFAQMPPGGPDGPRGHAPSPEQIAKFEQMRAKHQAEL 60
           MLT+KNRIL+GIAAVSISAVTLSAFAQM    P GP+GH PSPEQ+AKFEQMRAKHQAEL
Sbjct: 1   MLTIKNRILSGIAAVSISAVTLSAFAQM---PPGGPQGHPPSPEQVAKFEQMRAKHQAEL 57

Query: 61  HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA 120
           HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA
Sbjct: 58  HDKLKITASQEAAWKLFLDKTKPAPFDQAGRPNKDEWAKLSTPERLDKQLDMMRKREAFA 117

Query: 121 EQRIAATKDFYATLSPEQQKIFDAEHAKMERHRWEKMEHMRHGDRKGPPRDGKPAPDAPP 180
           EQRIAATKDFYATLSP+QQKIFDAEHAKMERHRWEKMEHMR GDRKGPP DG PAP APP
Sbjct: 118 EQRIAATKDFYATLSPQQQKIFDAEHAKMERHRWEKMEHMRRGDRKGPPHDGNPAPVAPP 177

Query: 181 A 181
           A
Sbjct: 178 A 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 554,190
Number of extensions: 21447
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)