BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0107.p (150 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310849|ref|YP_003774941.1| two component transcription reg... 300 3e-83 gi|300313665|ref|YP_003777757.1| two component transcription reg... 157 5e-40 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 140 4e-35 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 112 1e-26 gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 97 4e-22 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 300 bits (768), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 147/150 (98%), Positives = 148/150 (98%) Query: 1 MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKD 60 MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVA MRFAGWTLDLTARHLVN+D Sbjct: 99 MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRD 158 Query: 61 GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 120 GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD Sbjct: 159 GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 218 Query: 121 ARTPTIIKTVRNEGYVLATTVTAEGAGRSA 150 ARTPTIIKTVRNEGYVLATTVT EGAGRSA Sbjct: 219 ARTPTIIKTVRNEGYVLATTVTTEGAGRSA 248 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 157 bits (396), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 71/141 (50%), Positives = 100/141 (70%) Query: 1 MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKD 60 +GADDYL KPF+PREL ARI+ +LRR ++ P + V+ + FAGW LD AR ++ Sbjct: 96 VGADDYLPKPFDPRELLARIKVILRRARSFPEKLEADRVSHIHFAGWKLDTQARQAISPS 155 Query: 61 GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 120 GV + L G+++++L+ L+HP R L+RD LL G+E+ PFDRS+D+ ISRLRQ+LGD+ Sbjct: 156 GVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYGKEAMPFDRSIDVCISRLRQQLGDN 215 Query: 121 ARTPTIIKTVRNEGYVLATTV 141 R P +I+TVRN GY+L V Sbjct: 216 PREPALIRTVRNTGYMLMADV 236 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 140 bits (354), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 100/146 (68%), Gaps = 4/146 (2%) Query: 1 MGADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKD 60 +GADDY+AKP+ PREL ARI+++ RR + A P RFAG++LD R LV+ Sbjct: 96 LGADDYIAKPYSPRELLARIKAIHRRIGI--DSSAAP--RYYRFAGFSLDTVERTLVDSQ 151 Query: 61 GVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDD 120 G +V L+G +++LLK F++HP VL+R+ L E T+GR++ P DRS+D+QIS+LR +L D Sbjct: 152 GDIVPLTGMDYQLLKYFVEHPGDVLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDG 211 Query: 121 ARTPTIIKTVRNEGYVLATTVTAEGA 146 R P +IKTVR GYV + V+A A Sbjct: 212 GRQPHLIKTVRGAGYVFSADVSAAAA 237 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/138 (46%), Positives = 85/138 (61%), Gaps = 2/138 (1%) Query: 1 MGADDYLAKPFEPRELFARIRSVLRRTQALP-PNMAQPDVATMRFAGWTLDLTARHLVNK 59 MGADDYL KPF PREL ARI +VLRR P T F + LDL R L K Sbjct: 110 MGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTL-KK 168 Query: 60 DGVVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGD 119 +G ++L+ EF +LKVF + + L+R++L+E+ +GRE + FDRS+D+QISRLR+ + Sbjct: 169 NGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEP 228 Query: 120 DARTPTIIKTVRNEGYVL 137 D P I+TV GYV Sbjct: 229 DPANPLYIQTVWGLGYVF 246 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 97.4 bits (241), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 10/138 (7%) Query: 2 GADDYLAKPFEPRELFARIRSVLRRTQALPPNMAQPDVATMRFAGWTLDLTARHLVNKDG 61 GADDY+ KPF PREL ARI+++LRR P AQ M TLD A V+ G Sbjct: 117 GADDYITKPFSPRELTARIKALLRRKS---PEHAQ---EVMSAGPITLD-PASCSVSLSG 169 Query: 62 VVVALSGAEFRLLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDA 121 + + AE++LLK FL HP+RV +R QLL+ G +R+VD+ + RLR+ L D Sbjct: 170 ARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVWGDHVVIEERTVDVHVLRLRKALRD-- 227 Query: 122 RTPTIIKTVRNEGYVLAT 139 +IKTVR+ GY+L+T Sbjct: 228 -AEYLIKTVRSVGYMLST 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 457,373 Number of extensions: 17312 Number of successful extensions: 115 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 98 Number of HSP's successfully gapped: 23 Length of query: 150 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 73 Effective length of database: 1,255,275 Effective search space: 91635075 Effective search space used: 91635075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)