BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0100.p
         (171 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis transmem...   342   9e-96
gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/Cbi...    59   3e-10

>gi|300310842|ref|YP_003774934.1| cobalamin biosynthesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  342 bits (877), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 169/171 (98%), Positives = 171/171 (100%)

Query: 1   VFGVFFWFLMPVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLT 60
           VFGVFFWFLMPVGPALAVMYRVAEYLSRAWNEPDHMK+EAFGRFAAQAFYWIDWIPARLT
Sbjct: 149 VFGVFFWFLMPVGPALAVMYRVAEYLSRAWNEPDHMKFEAFGRFAAQAFYWIDWIPARLT 208

Query: 61  AAAFAVVGNFEDAIYAWRNFASRWDDEAAGIILAAGGGAMGVRFGTEKEAAAGIILPADA 120
           AAAFAVVGNFEDAIYAWRNFASRWDDE+AGIILAAGGGAMGVRFGTEKEAAAGIILPADA
Sbjct: 209 AAAFAVVGNFEDAIYAWRNFASRWDDESAGIILAAGGGAMGVRFGTEKEAAAGIILPADA 268

Query: 121 ATVDSMPEETDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 171
           ATVDSMPEETDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG
Sbjct: 269 ATVDSMPEETDGLPGDTPSPRTLQSTVGLVWRALLLWMFLLLLLSVAVWMG 319


>gi|300311955|ref|YP_003776047.1| cobalamin biosynthesis CobD/CbiB
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 1   VFGVFFWFLMPVGPALAVMYRVAEYLSRAWNEPDHMKYEAFGRFAAQAFYWIDWIPARLT 60
           VFG  FWFL+  GP  A+++R++  L   W    + ++  FG  AA+    ++W PARLT
Sbjct: 156 VFGTLFWFLLAGGPG-ALLFRLSNTLDAMWGY-RNARFLYFGWAAARIDDALNWCPARLT 213

Query: 61  AAAFAVVGNFEDAIYAWRNFASRWDDEAAGIIL 93
           A ++AV+G    A+  W+  A  W    AG ++
Sbjct: 214 ALSYAVLGQRRQALACWKEQAPAWSSPNAGPVM 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 483,114
Number of extensions: 15243
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 171
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,245,805
Effective search space: 114614060
Effective search space used: 114614060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)