BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0095.p
         (174 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein [He...   324   3e-90

>gi|300310838|ref|YP_003774930.1| 16s rRNA processing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  324 bits (830), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 165/174 (94%), Gaps = 2/174 (1%)

Query: 1   VRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGT 60
           VRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGT
Sbjct: 33  VRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGT 92

Query: 61  VVSISRKHFPALDDNEFYWVDLIGSAVENLQGEALGVVSDMMDNGAHPILVVKAPAQETA 120
           VVSISRKHFPALDDNEFYWVDLIGSAVENLQGE LGVVSDMMDNGAHPIL V AP Q+TA
Sbjct: 93  VVSISRKHFPALDDNEFYWVDLIGSAVENLQGEHLGVVSDMMDNGAHPILKVTAPVQDTA 152

Query: 121 PEPQPQPAADAKPKKGAKEKSAAAPELLIPFVDQFVKTVQQSEKKIIVDWDKDY 174
           PE    PAADAKPKKGAKEKSAAA E+LIPFVDQFVKTVQQSEKKIIVDWDKDY
Sbjct: 153 PE--LDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQQSEKKIIVDWDKDY 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.129    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 415,374
Number of extensions: 13416
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,245,805
Effective search space: 118351475
Effective search space used: 118351475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)