BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0092.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase [Herbasp...   350   3e-98
gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase [Herbasp...   114   7e-27
gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase [Herbasp...    64   7e-12

>gi|300310835|ref|YP_003774927.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 594

 Score =  350 bits (899), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/194 (93%), Positives = 190/194 (97%)

Query: 1   MSIDVTSTGVQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTVRDGGAV 60
           MSIDVTSTGVQVHGGMGFIEETGAAQ+YRDARILPIYEGTTAIQANDLVGRKT RDGGAV
Sbjct: 401 MSIDVTSTGVQVHGGMGFIEETGAAQYYRDARILPIYEGTTAIQANDLVGRKTARDGGAV 460

Query: 61  AKGIIAQVRQTVAELQGDAQLQPIAARLAEAADALEQVVGYVVANVKSDIKAVFAGSVPY 120
           AKGI+AQVR+TV+ELQGDAQLQPIAARL EAADALEQVV YVVANVKSDIKAVFAGSVPY
Sbjct: 461 AKGILAQVRKTVSELQGDAQLQPIAARLGEAADALEQVVDYVVANVKSDIKAVFAGSVPY 520

Query: 121 LKMAGVVLGGWQMARAAAIAAGKLKSGEGDGKFYEAKLATARFYAEQILPQALAYRTAIV 180
           LKMAGVVLGGWQMARAAA++A KLK+GEGDGKFYEAKLATARFYA+QILPQALAYRTAIV
Sbjct: 521 LKMAGVVLGGWQMARAAAVSAAKLKAGEGDGKFYEAKLATARFYADQILPQALAYRTAIV 580

Query: 181 DGGAAVMALAEDQF 194
           DGGAAVMALAE+QF
Sbjct: 581 DGGAAVMALAEEQF 594


>gi|300309596|ref|YP_003773688.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 596

 Score =  114 bits (284), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/189 (38%), Positives = 102/189 (53%), Gaps = 3/189 (1%)

Query: 6   TSTGVQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTVRDGGAVAKGII 65
           TS  +QV+GG G+I E G  Q+ RDARI  IYEGT  IQ+ DL+GRK + D GA  K   
Sbjct: 411 TSECLQVYGGHGYIAEWGMEQYVRDARINMIYEGTNTIQSLDLLGRKILMDNGAKLKKFG 470

Query: 66  AQVRQTVAELQGDAQLQPIAARLAEAADALEQVVGYVVANVKSDIKAVFAGSVPYLKMAG 125
           AQ++  V E   D  +      LA+  D + ++   +     ++     A +VPYL++ G
Sbjct: 471 AQIQAFVEEHGTDESMSEFITPLADIGDKVTKLTMEIGMKSFANQDEAGAAAVPYLRVVG 530

Query: 126 VVLGGWQMARAAAIAAGKLKSGEGDGKFYEAKLATARFYAEQILPQALAYRTAIVDGGAA 185
            ++  +  AR A IA  K  SG+    FY AKLATARFY  ++LP+          G A 
Sbjct: 531 HLVFSYLFARMAKIALEKQDSGD---SFYAAKLATARFYFARLLPETAMLIRQARSGAAN 587

Query: 186 VMALAEDQF 194
           +MAL  + F
Sbjct: 588 LMALDAELF 596


>gi|300313303|ref|YP_003777395.1| acyl-CoA dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 591

 Score = 64.3 bits (155), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 60/132 (45%), Gaps = 3/132 (2%)

Query: 5   VTSTGVQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTVRDGGAVAKGI 64
             S  +QV GG G++ ETG  Q  RDARI  IYEGT  IQA D + RK + D G      
Sbjct: 399 CASRALQVFGGHGYVVETGIEQFMRDARITMIYEGTNEIQAIDFLMRKVLGDEGRRLDDF 458

Query: 65  IAQVRQTVAELQGDAQLQPIAARLAEAADALEQVVGYVVANVKSDIKAVFAGSVPYLKMA 124
           +  VR  +AE  G   L   A  L EA D L      + A         +  +   L++ 
Sbjct: 459 LGLVRADIAEASG---LGEQARLLGEAVDKLRIFASRIAAAAAQAPALPYYVADEMLRLC 515

Query: 125 GVVLGGWQMARA 136
           G V  GW   RA
Sbjct: 516 GHVALGWMWLRA 527


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 561,174
Number of extensions: 20908
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 3
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)