BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0090.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein ...   605   e-174
gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein ...   139   4e-34

>gi|300310834|ref|YP_003774926.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  605 bits (1560), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 307/309 (99%), Positives = 308/309 (99%)

Query: 1   MTALVIAEHDNASLKGSTLNTITAAAQAGGDVHVLVAGANAKAAADAAAQVAGVAKVLLA 60
           MTALVIAEHDNASLKGSTLNTITAAAQAGGDVHVLVAG+NAKAAADAAAQVAGV KVLLA
Sbjct: 1   MTALVIAEHDNASLKGSTLNTITAAAQAGGDVHVLVAGSNAKAAADAAAQVAGVTKVLLA 60

Query: 61  DAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKVESA 120
           DAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKVESA
Sbjct: 61  DAPQFADGLAENVAEQVLAIAKDYSHILAPATAYGKNILPRVAAKLDVGQISDITKVESA 120

Query: 121 DTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSFVGR 180
           DTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSFVGR
Sbjct: 121 DTFERPIYAGNAIATVQSIDPIKVITVRTTGFDPAAQGGSAAVESIPAVADSGKSSFVGR 180

Query: 181 EVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQ 240
           EVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQ
Sbjct: 181 EVAKSDRPELTAAKIIVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQ 240

Query: 241 VGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEV 300
           VGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEV
Sbjct: 241 VGQTGKIVAPQLYIAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEV 300

Query: 301 VPELVKQLG 309
           VPELVKQLG
Sbjct: 301 VPELVKQLG 309


>gi|300312146|ref|YP_003776238.1| electron transfer flavoprotein
           subunit alpha [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  139 bits (349), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 130/231 (56%), Gaps = 11/231 (4%)

Query: 87  ILAPATAYGKNILPRVAAKLDVGQISDITKV-----ESADTFERPIYAGNAIATVQSID- 140
           +L  ATA G+++   VA  L  G  +D T +       +    RP + G+ + T+ +++ 
Sbjct: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180

Query: 141 PIKVITVRTTGF---DPAAQGGSAAVESIPAVADSGKSSFVGREVA--KSDRPELTAAKI 195
             ++ TVR       +P        +E    + +S   + V   +   + D+P+L  A I
Sbjct: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQDKPQLPFADI 240

Query: 196 IVSGGRGMGSAESFKILEPLADKLNAAMGASRAAVDAGYVPNDWQVGQTGKIVAPQLYIA 255
           IV+GGRGM  AE+F+++  LA  L A +GA+R  V A +V  + QVGQ+GK V P+LYIA
Sbjct: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300

Query: 256 VGISGAIQHLAGMKDSKVIVAINKDEEAPIFSVADYGLVGDLFEVVPELVK 306
            GISGAIQH  GM DS VI+AIN D  APIF  A YG+VG+   ++P L +
Sbjct: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTE 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.130    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 888,194
Number of extensions: 35995
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)