BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0089.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein ...   469   e-134
gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit be...    86   4e-18

>gi|300310833|ref|YP_003774925.1| electron transfer flavoprotein
           subunit beta [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  469 bits (1207), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/241 (98%), Positives = 239/241 (99%)

Query: 1   VDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIAVSAGVTQCQE 60
           VDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIAVSAGVTQCQE
Sbjct: 11  VDYNVKVRVKSDGSGVDIANVKMSMNPFDEIAVEEAVRLKEGGKVTEVIAVSAGVTQCQE 70

Query: 61  TLRTAMAIGADRGILAEVAADVELQPLAVAKILKALAEKEQPQLIILGKQAIDDDCNQTG 120
           TLRTAMAIGADRGILAEV ADVELQPLAVAKILKALAEKEQPQLIILGKQAIDDDCNQTG
Sbjct: 71  TLRTAMAIGADRGILAEVGADVELQPLAVAKILKALAEKEQPQLIILGKQAIDDDCNQTG 130

Query: 121 QMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDLRLNEPRYVTL 180
           QMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDLRLNEPRYVTL
Sbjct: 131 QMLAALLGWPQATFASKVVLEEGKVTVTREVDGGLETLALTLPAIITTDLRLNEPRYVTL 190

Query: 181 PNIMKAKKKQLDTVKPDELGVDVAPRVKTLKVTEPAKRSAGVKVPDVATLVAKLKNEAKV 240
           PNIMKAKKKQLDTVKP+ELGVDVAPRVKTLKV EPAKRSAGVKVPDVATLVAKLKNEAKV
Sbjct: 191 PNIMKAKKKQLDTVKPEELGVDVAPRVKTLKVAEPAKRSAGVKVPDVATLVAKLKNEAKV 250

Query: 241 I 241
           I
Sbjct: 251 I 251


>gi|300312145|ref|YP_003776237.1| flavoprotein subunit subunit beta
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 12/187 (6%)

Query: 25  MNPFDEIAVEEAVRLKE--GGKVTEVIAVSAGVTQCQETLRTAMAIGADRGIL----AEV 78
           +NP+D  ++EEA+R+K+  GG+VT    ++ G  Q +  LR  ++ GAD  IL    A  
Sbjct: 34  INPYDLFSLEEALRIKDQVGGRVT---VLTMGPPQAEAALRKCISFGADDAILVTDRAFA 90

Query: 79  AADVELQPLAVAKILKALAEKEQPQLIILGKQAIDDDCNQTGQMLAALLGWPQATFASKV 138
            AD      A+A  ++ +++ +   L++ GKQ ID D  Q G  +A  L     T+ SK+
Sbjct: 91  GADTLATSYALASAIQRISQDQAVDLVLAGKQTIDGDTAQVGPGIAKRLDLQLLTYVSKI 150

Query: 139 VLEE---GKVTVTREVDGGLETLALTLPAIITTDLRLNEPRYVTLPNIMKAKKKQLDTVK 195
           V  +    ++ + R  +GG++ L   LP +IT     NE R+ T+ N+ +A +  + T  
Sbjct: 151 VSLDPIAREIVIQRRAEGGVQVLQTRLPCLITMLEGSNEMRFATMENMFRAARHPIRTWD 210

Query: 196 PDELGVD 202
               G++
Sbjct: 211 RTAAGIE 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 625,340
Number of extensions: 22894
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)