BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0085.p
         (56 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa...   118   1e-28
gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte...    74   2e-15
gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa...    73   5e-15
gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa...    72   1e-14
gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa...    68   2e-13

>gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  118 bits (295), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 54/56 (96%), Positives = 56/56 (100%)

Query: 1   MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFADPQTPEARQFIGAGALK 56
           MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPS+EFFADPQTPEARQFIGAGA+K
Sbjct: 189 MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGAGAIK 244


>gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter
           ATPase [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 73.9 bits (180), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 39/51 (76%)

Query: 1   MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFADPQTPEARQFIG 51
           MT+L+VTHEM FAR V +  VFMHQGKV E  P +E F +P+TPE +QFIG
Sbjct: 189 MTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239


>gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 72.8 bits (177), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 1   MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFADPQTPEARQFIGA 52
           MTM+LVTHEM FAR++AD+ VFMHQG+VWE  P  E F+ P+T E ++F+ +
Sbjct: 191 MTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVSS 242


>gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 1   MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFADPQTPEARQFIGAG 53
           MTM+LVTHEM FARRVAD  +FMHQG+VWE +   E    P TPE R F+G G
Sbjct: 190 MTMILVTHEMAFARRVADQVIFMHQGQVWE-QGGPEILDAPVTPELRSFVGTG 241


>gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 67.8 bits (164), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 37/52 (71%), Gaps = 1/52 (1%)

Query: 1   MTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSKEFFADPQTPEARQFIGA 52
           MTMLLVTHEM FA+RVAD  ++MHQG+VWE  P  E    P TPE + F+ A
Sbjct: 212 MTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPG-EMLDHPYTPELQAFLAA 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 182,730
Number of extensions: 5122
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 7
Length of query: 56
Length of database: 1,619,870
Length adjustment: 29
Effective length of query: 27
Effective length of database: 1,482,555
Effective search space: 40028985
Effective search space used: 40028985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)