BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0082.p (231 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 449 e-127 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 260 7e-71 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 213 1e-56 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 206 1e-54 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 194 6e-51 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/231 (98%), Positives = 228/231 (98%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M YDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGS PARLAVTSY Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAAQALAMTR QVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLGVARPRRM 231 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 260 bits (664), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 171/224 (76%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M+Y F F +F + D+LL+GA LTI+LSALS++ G AVG AI A R V +Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TP LVQ+F++FFGL SIG ++ A AA++A+TVN+GAY+TEI+RAG+ +IHP Q Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAA+ L M+R V HVVL PA+E+VYP+L SQF L+MLASSI S ISAEELTATANL+ Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 +ETFRSFE+Y V+ V Y++L+ LFR AFW I + F R+R+LG Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLG 224 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/221 (48%), Positives = 148/221 (66%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 M Y F F F + D ++ G TI L A+ + G+AVGIFGA G + V+ Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE+IR+TPFLVQLF IFFGLPS+ + + AA+VAM +NLGAYSTEI+RAG+ AI Q Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 IEAAQ+L+M+R Q+ RH++L PAL+K++PAL+SQ ++ML S++ S I+ EEL+ AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRR 221 FR+FE Y+V +Y++LA+L R LIG RR Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 206 bits (525), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/224 (49%), Positives = 152/224 (67%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARLAVTSY 60 MHY+F FA + H LL GA T++LS L+ + G +G A+ R AV+ Y Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIR+TP L+Q + + FGL S+GV + A +A+ +N+GAYS EIVRAG+ +IH Q Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA L ++ QV HVVL PA+E+V+PAL SQF LMMLASSI+S++ AEEL AN + Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 ++TFR+FE++L++ Y+ LA L R FWL+G +VF RRR+LG Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLG 224 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 194 bits (492), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 99/221 (44%), Positives = 157/221 (71%), Gaps = 6/221 (2%) Query: 1 MHYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSAPARL---AV 57 M++ F+ + + L GA LT++++ L++I G+A+GIF ++ ++P R Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIF---VAFAKNSPHRWLARGC 57 Query: 58 TSYVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIH 117 ++Y+E++R+TPFLVQ+F+++FGL S+G+++ AA++AM +N+ AY+ EI+RAG+ ++ Sbjct: 58 SAYIEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVP 117 Query: 118 PSQIEAAQALAMTRGQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATA 177 QIEAAQ L ++ ++ HV+L PA+E+VYPAL SQF LMM AS++ S ISAEELTA A Sbjct: 118 RGQIEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIA 177 Query: 178 NLLDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFK 218 N + ++TFRS E YLVV LY++LA+L +L + IG +FK Sbjct: 178 NTVQSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFK 218 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.141 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 492,075 Number of extensions: 17526 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 20 Length of query: 231 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,231,600 Effective search space: 183508400 Effective search space used: 183508400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 129 (54.3 bits)