BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0079.p (345 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310825|ref|YP_003774917.1| LacI family transcription regul... 452 e-128 gi|300311611|ref|YP_003775703.1| transcription regulator DNA-bin... 104 8e-24 gi|300309618|ref|YP_003773710.1| LacI family transcription regul... 76 4e-15 gi|300310423|ref|YP_003774515.1| GntR family transcription regul... 74 2e-14 gi|300309932|ref|YP_003774024.1| transcription regulator protein... 69 6e-13 >gi|300310825|ref|YP_003774917.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 382 Score = 452 bits (1163), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/232 (93%), Positives = 224/232 (96%) Query: 1 VRQHTKTGTDRVTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQ 60 VRQ KTGTDRVTIAQVAREAGVSKTSVSRYLGGEFDALS LR+QIGKTIARLGYQPSQ Sbjct: 17 VRQSIKTGTDRVTIAQVAREAGVSKTSVSRYLGGEFDALSVRLREQIGKTIARLGYQPSQ 76 Query: 61 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 120 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA Sbjct: 77 MARGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLA 136 Query: 121 ALHSYSVEGLLFNTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATH 180 ALHSYSVEGLLFNTQGRNVTPL ELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLAT Sbjct: 137 ALHSYSVEGLLFNTQGRNVTPLHELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATR 196 Query: 181 HLLAQGYTDIALVVQPLFGVSSRQGRQAGFLQAMAQRPDCHGETLEVDVDQP 232 HLLAQGYTDIALVVQ L+GVSSRQGRQAGFLQAM++R DCHG+TLEVDV+QP Sbjct: 197 HLLAQGYTDIALVVQSLYGVSSRQGRQAGFLQAMSERRDCHGQTLEVDVEQP 248 >gi|300311611|ref|YP_003775703.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 104 bits (260), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 102/204 (50%), Gaps = 4/204 (1%) Query: 13 TIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRTRL 72 TI VAR AGVS T+VS L + +S+ R+++ + L Y PS +AR L+ T Sbjct: 3 TIKDVARLAGVSYTTVSHVLN-QTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTGS 61 Query: 73 IGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGLLF 132 IG+++ + NPY + G E C GY+++LCN+ +D +++ L L + +GL+ Sbjct: 62 IGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLII 121 Query: 133 NTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDIAL 192 T N L G+ P VLLDR + D DLV DN LA HLL +A Sbjct: 122 AT--LNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVAC 179 Query: 193 VVQPLFGVSSRQGRQAGFLQAMAQ 216 + P G+ R GF Q + Q Sbjct: 180 IAGP-DGLELSDERVRGFRQTLEQ 202 >gi|300309618|ref|YP_003773710.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 75.9 bits (185), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 3/184 (1%) Query: 13 TIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRTRL 72 T+++VAR AGV+ +VS L + + R ++ +A+LGY+P AR L GR Sbjct: 3 TLSEVARLAGVTSATVSNVLR-QRGKVGEQTRQRVLDAVAQLGYRPHLTARALAEGRAPT 61 Query: 73 IGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGLLF 132 + ++V+ I NP+ AE A + HG L++CNT +D + L + +G+L Sbjct: 62 LALVVSSIANPFYPEFALAAERAARDHGRFLIVCNTNDDPDIGRAYLDQIAGTLSDGVLI 121 Query: 133 NTQGRNVTPLRELGQAAFPVVLL--DRHVEGCDFDLVGLDNVKAAQLATHHLLAQGYTDI 190 + LR+ Q PVVL ++ + + +D +A +A HLL G+ Sbjct: 122 MNANLPMDELRKTEQRGAPVVLCMWEKPDAPPELPCIAVDFFEAGAIAARHLLGLGHQCF 181 Query: 191 ALVV 194 A +V Sbjct: 182 AALV 185 >gi|300310423|ref|YP_003774515.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 15/186 (8%) Query: 9 TDRVTIAQVAREAGVSKTSVSRYLGGEFDALSAPL------RDQIGKTIARLGYQPSQMA 62 T RVTI VA EAGVS +VSR AL P R +I + I +LGY P+Q A Sbjct: 23 TGRVTIIDVAAEAGVSPMTVSR-------ALKTPALVQEQSRQRILEAIDKLGYVPNQAA 75 Query: 63 RGLKGGRTRLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAAL 122 L R++++ +LV + N + L G GY ++ TG D +E++ +A Sbjct: 76 ATLASARSQVVAVLVPSLTNAVFIETLSGIRDYLASVGYQFLIGETGYDRHKEEELIATY 135 Query: 123 HSYSVEGLLF-NTQGRNVTPLRELGQAAFPVVLLDRHVEGCDFDLVGLDNVKAAQLATHH 181 +++ G L ++Q ++ R +A V + D D+ VG +A H Sbjct: 136 LAHAPAGFLLSSSQQHDILQSRPASRAIPAVRMFDLGRSQQDYS-VGFSQTRAGHAVARH 194 Query: 182 LLAQGY 187 L +GY Sbjct: 195 LAERGY 200 >gi|300309932|ref|YP_003774024.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 358 Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 11/212 (5%) Query: 11 RVTIAQVAREAGVSKTSVSRYLGGEFDALSAPLRDQIGKTIARLGYQPSQMARGLKGGRT 70 R +I QVA AGVS +VSR L + ++SA ++I ++IA LG++P+ R L+ G + Sbjct: 2 RPSIKQVAHLAGVSIATVSRLLN-KPGSVSAETAEKIHRSIAELGFRPNFTGRNLRAGNS 60 Query: 71 RLIGMLVADILNPYSVAVLHGAEAACQKHGYTLMLCNTGNDEAREKQSLAALHSYSVEGL 130 R +G++V + N L G E A + Y++M T E ++ L + V+G+ Sbjct: 61 RTVGVVVPTLSNTVFAQCLQGIELAARALDYSVMFTTTEYLPEEETAAVELLLGHRVDGM 120 Query: 131 LFNTQGRNVT-PLRELGQAAFPVVLLDRHVEGCDFDL------VGLDNVKAAQLATHHLL 183 + + L L + P VL + G D V +DN AA A HL+ Sbjct: 121 ILTVADASANATLDLLERERIPFVLAYNQL-GTDQTAAPARASVSVDNRAAACDAVAHLI 179 Query: 184 AQGYTDIALVVQPLFGVSSR-QGRQAGFLQAM 214 G+ I ++ F S R R G+L AM Sbjct: 180 GLGHRRIQML-SGRFNASDRAMQRYYGYLDAM 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.132 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,113,909 Number of extensions: 46193 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 7 Length of query: 345 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 259 Effective length of database: 1,212,660 Effective search space: 314078940 Effective search space used: 314078940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)