BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0073.p
         (376 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746...    81   1e-16
gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032...    76   4e-15

>gi|300310081|ref|YP_003774173.1| hypothetical protein Hsero_0746
           [Herbaspirillum seropedicae SmR1]
          Length = 360

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 148/354 (41%), Gaps = 42/354 (11%)

Query: 22  SLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPRMGFPAGEVAA 81
           S++  L A   +  F Q  R++EL      G A + AV  + +RF  R  +GFPA E+ A
Sbjct: 11  SVIERLFAAPHRFQFFQAVRMIELWFKR-NGVAPERAV-CDFLRFANRTALGFPASEIEA 68

Query: 82  VE----FDDDHPEAPPTVLT-----------TFMGLYGVDATMPSHMVDEIALREEGH-- 124
           ++     DD         L            TFMG  G    +P+H  + IA  +  H  
Sbjct: 69  IDAVASSDDTSVAGMAQSLREGKMKYVRLTPTFMGFLGGSGALPAHYTERIARHQIEHRD 128

Query: 125 EAVQSFLDQFNHRYVALLYRAWKKYRYPEQFGSGGSDPHSRRLLCLGGLGWGDKPKR--- 181
           E  ++FLD F+ R +AL Y+AW KYR   Q+  G  D     LL L G+G+    +R   
Sbjct: 129 EGPRAFLDVFSTRSLALFYQAWSKYRLAFQYEMGRRDKFLPLLLSLSGIGFRSLRERLLE 188

Query: 182 ---AGLPDSRMLALLGLLIQRTRTPEGLGGVVA--LAIPGVGVRIEEFFPVFTSTGKAKP 236
               G+ D  +      L  R  +   +  V++   +IP   + IE+F   +    +   
Sbjct: 189 VDGRGVRDESIAHFAAALSHRPASAPYMQQVLSEYFSIP---LTIEQFVGQWYDVPREHQ 245

Query: 237 LSSGAAAVGSSDRGRGAGLGGGYVLGKQVAYRSRAVRVTLQPADDQQAHGLLPGEPLHKD 296
                  +GS++   G  +      G++V  R   +R+ L P         LPG    + 
Sbjct: 246 -----TMLGSTNSALGTAMA-----GQRVWQRDLRMRLRLGPLALPDFEQFLPGARASQA 295

Query: 297 LMAFVQLYVGVKADVHLSMQLPARLVPKPAIGRSSAGHTPRLGWTTLLSCAEEK 350
           L   + ++ G   +  + + L A  V    +G S      RLGW + ++ A ++
Sbjct: 296 LSRMLGVFTGPTLEYEIQLILRAEDV--RGLGLSPDRTGGRLGWDSFVATAPQQ 347


>gi|300313319|ref|YP_003777411.1| hypothetical protein Hsero_4032
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 145/364 (39%), Gaps = 62/364 (17%)

Query: 22  SLVASLLARAPQMNFMQLCRLLELGVPEWTGFATQDAVRHEPVRFRPRPRMGFPAGEVAA 81
           S++  L A   +  F Q  R++E       G   + AV  + VRF  R  +GFPA E+ A
Sbjct: 11  SVIERLFAVPHRFQFFQAVRMIECWFRR-NGVPHERAV-SDFVRFANRTVLGFPASEIEA 68

Query: 82  VEFDDDHPEAPPTVLT--------------------TFMGLYGVDATMPSHMVDEIALRE 121
           +   D +P      ++                    TFMG  G   ++P+H  + +A  +
Sbjct: 69  I---DTYPSREGEAISVDNMEQALRCGQMKYVRITPTFMGFLGSSGSLPAHYTERVARHQ 125

Query: 122 EGH--EAVQSFLDQFNHRYVALLYRAWKKYRYPEQFGSGGSDP-------------HSRR 166
             H  E  ++FLD F+ R +AL Y AW KYR    +  G  D              HS R
Sbjct: 126 IEHRDEGPRAFLDAFSTRSLALFYHAWNKYRLTFHYDVGRRDTFLPLLLSLSGLGFHSLR 185

Query: 167 LLCLGGLGWGDKPKRAGLPDSRMLALLGLLIQRTRTPEGLGGVVALA-IPGVGVRIEEFF 225
                G G        G+ D  +    G L  R R P  L     L     V ++IE+F 
Sbjct: 186 QRLQDGTG-------NGVRDESLGYFAGAL--RHRPPSALYMQKVLGEYFSVPLQIEQFI 236

Query: 226 PVFTSTGKAKPLSSGAAAVGSSDRGRGAGLGGGYVLGKQVAYRSRAVRVTLQPADDQQAH 285
             +    +          +GS++      + G  ++G++V  R   +R+ + P   +   
Sbjct: 237 GYWYKVPRQHQ-----TVLGSTN-----SVLGKAMVGERVWQRDLRMRLRIGPVAIRDFE 286

Query: 286 GLLPGEPLHKDLMAFVQLYVGVKADVHLSMQLPARLVPKPAIGRSSAGHTPRLGWTTLLS 345
             LPG+ +   L   + ++ G   +  + + L A+ V    +G    G   RLGW + ++
Sbjct: 287 KFLPGKEVSVALARMLGMFSGSTLEYEVEVALLAQDVRGMTLGSMREG--GRLGWDSFVA 344

Query: 346 CAEE 349
            A E
Sbjct: 345 TAPE 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,250,666
Number of extensions: 52918
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 289
Effective length of database: 1,207,925
Effective search space: 349090325
Effective search space used: 349090325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)