BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0072.p (604 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033... 219 4e-58 gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745... 202 5e-53 >gi|300313320|ref|YP_003777412.1| hypothetical protein Hsero_4033 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 219 bits (559), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 178/625 (28%), Positives = 296/625 (47%), Gaps = 80/625 (12%) Query: 7 ILRYYEAEMRYLRDAGKEFAKAHPDRARRLNLDRVGDRDPYVERLFEGFSFLTGRIRQKL 66 +L YYE E+ +LR ++F++ +P A L + DP++ER+ + ++ L R+ ++L Sbjct: 4 LLPYYERELSFLRRYSRDFSERYPKIAGSLLMAGEICEDPHIERMIQSYALLNARVSKRL 63 Query: 67 DDEQPELTEGLVSLLWPHYLRMIPSLSV--VELVPYAEKLQKTEIVPAGISVRSAPIRIS 124 DD+ P+ TE L +L+PHYLR PS S+ ++ AE+L I+P G ++ + P+ Sbjct: 64 DDDYPQFTEALFEVLYPHYLRPFPSCSIARMDCAESAEQLTSATIIPRGTTLSTRPV--- 120 Query: 125 TRAEDSERAGKTVQCMYRTTQAVTLQPIAITHATPTVRHDG----------RSVIRIGFD 174 K V C ++T V + PI +THA + D S + IG Sbjct: 121 ----------KGVVCQFQTVYDVPVAPICLTHAVFSPIIDAPEAVVLPTSVTSSLSIGIA 170 Query: 175 VHGATRRI-ETDLSTLRLYLSADLPVAFAMHLALTRQVHSVEWRIPEIRDGEPMPLPGVT 233 G + + DL +LR+++ + A+ +L + + +P R +PLP + Sbjct: 171 TAGEQLALAKLDLVSLRVFIDGEASFCAALRDSLFMRSAAAWIELPGSRRW--VPLPAIP 228 Query: 234 ISPAGFSTQERLWPKADASFSGYQLLLEYFTFREKFLF--VDLCGLDITKLPENSSSFEL 291 ++ GF+ ++ L S Y+ L EYF F EKF F +DL + + LP +S SF L Sbjct: 229 LAEVGFADEDALIDFPSQSHPAYRHLTEYFAFPEKFNFFDIDLSAI-LAVLPADSKSFIL 287 Query: 292 EIALT----QAYPADQ--RFSAENLRLFCSPVINLFELDAEPIEIDHHETEYRVVPASRQ 345 + L+ ++ A Q SA NL L C+PVINLF +PI + H Y V+P R+ Sbjct: 288 HLGLSGLRADSHIARQLGGVSAANLLLGCTPVINLFSQRGDPIRLTHAGAYYPVLPDGRR 347 Query: 346 GEHVETYSVEAIEAFDHETAER---YEYVPFSTFRHRGGMLRYEAPE---RYFHTRVRPG 399 E YS+++++ ET + + PF + RH ++PE Y+ R Sbjct: 348 AFGYEVYSIDSVQLV-RETPQGESITSFRPFYSLRHG------QSPESDGHYWAMR---- 396 Query: 400 VSGLHETWVVLGGHAWETM----------NVLPEESLSLRVTGTNGLLP---RKGLQEAS 446 + + L +ET + + ++LS+ +T TN LP GL Sbjct: 397 ----RDELIALKSPGYETEISIVDIDFDPSKIETDTLSIELTCTNRDLPALLAYGLPGGD 452 Query: 447 LNELGASTQNVSGVRNLVSPTLPLYPPTQDRFQWRVLSHLAPNFLSMMNA--EVLRGALA 504 L+ G + + L PTLP QWR++S L+ N LS+M E + L Sbjct: 453 LSLEGGGVIRTAAL--LRKPTLPSRFERGRGAQWRLISQLSLNHLSLMRVGLEAFQEMLT 510 Query: 505 LYDWTNDEMNRRRLEGIRWVSQELIEEVSGG----SVERGVSIEVTLDSHAFAGEGDVML 560 LYD +N +++R++ I + G S+ RG+ +++T+D F G G + Sbjct: 511 LYDQSNSPISQRQISAIAAIDHRPATAWLPGNPFASLVRGIEVKLTVDEEGFVGSG-LHA 569 Query: 561 FGELLHRFFALYADINLFTKLTIVS 585 F ++ RF LY N F++LT++S Sbjct: 570 FAGVIDRFMGLYVHANSFSQLTVIS 594 >gi|300310080|ref|YP_003774172.1| hypothetical protein Hsero_0745 [Herbaspirillum seropedicae SmR1] Length = 614 Score = 202 bits (515), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 174/623 (27%), Positives = 283/623 (45%), Gaps = 76/623 (12%) Query: 7 ILRYYEAEMRYLRDAGKEFAKAHPDRARRLNLDRVGDRDPYVERLFEGFSFLTGRIRQKL 66 +L YYE E+ +LR +EF++ +P A L + DP++ER+ + ++ L R+ ++L Sbjct: 4 LLPYYERELSFLRRYSREFSERYPKIAGSLLMSGEVCEDPHIERMIQSYALLNARVSKRL 63 Query: 67 DDEQPELTEGLVSLLWPHYLRMIPSLSVVEL--VPYAEKLQKTEIVPAGISVRSAPIRIS 124 DD+ PE TE L +L+PHYLR PS S+ + A +L ++P G ++ Sbjct: 64 DDDYPEFTEALFEVLYPHYLRPFPSCSIARMDYAASAAQLTTASVIPRGTAL-------- 115 Query: 125 TRAEDSERAGKTVQCMYRTTQAVTLQPIAITHAT--PTVRHDGRSVIRIGFDVHGATRRI 182 + R K V C ++T VT+ PI ++HAT P + + + Sbjct: 116 -----TTRQVKGVACKFQTAYDVTVAPIRLSHATFAPIIEAPEAVTLPTSVSSSLSIVID 170 Query: 183 ETD---------LSTLRLYLSADLPVAFAMHLALTRQVHSVEWRIPEIRDGEPMPLPGVT 233 T LS+LR+++ + A+ +L + + +P G L V Sbjct: 171 TTSEQLTLAQLGLSSLRVFIDGEASFCAALRDSLFMRSVAAWVELPN--SGRWTALRKVP 228 Query: 234 ISPAGFSTQERLWPKADASFSGYQLLLEYFTFREKF-LFVDLCGLDITKLPENSSSFELE 292 ++ GF+ + L S Y+LL EYF F EKF F + LP + F L Sbjct: 229 LAEVGFAEDDALIDFPARSHPAYRLLTEYFCFPEKFNFFDLDLAAILALLPTGTRKFTLH 288 Query: 293 IALT----QAYPADQ--RFSAENLRLFCSPVINLFELDAEPIEIDHHETEYRVVPASRQG 346 + L+ ++ A Q SA NL L C+PVINLF +PI + H Y VVP +R+ Sbjct: 289 LGLSGLRADSHVARQLGGVSAANLLLGCTPVINLFRQRGDPIRLTHAGASYPVVPDARRA 348 Query: 347 EHVETYSVEAIEAFDH--ETAERYEYVPFSTFRHRGGMLRYEAPER---YFHTRVRPGVS 401 E YS+++++ + ++ PF + RH ++PE+ Y+ R Sbjct: 349 FGYEVYSIDSVQLVRQTPQGESVTQFRPFYSLRHG------QSPEKEGHYWAMR------ 396 Query: 402 GLHETWVVLGGHAWET------MNVLPEE----SLSLRVTGTNGLLPRK---GLQEASLN 448 + V L +ET ++ P E +LS+ +T TN LP GL L Sbjct: 397 --RDELVALKSPGYETEISIVDIDFDPAEVETDTLSIELTCTNRDLPASLTYGLPGGDLQ 454 Query: 449 ELGASTQNVSGVRNLVSPTLPLYPPTQDRFQWRVLSHLAPNFLSMMNA--EVLRGALALY 506 G + + L PTLP WR++SHL+ N LS+M E + L LY Sbjct: 455 MEGGGLVRSAAL--LRKPTLPARFERGRGAHWRLISHLSLNHLSLMRGGLEAFQEMLTLY 512 Query: 507 DWTNDEMNRRRLEGIRWVSQELIEEVSGG----SVERGVSIEVTLDSHAFAGEGDVMLFG 562 D +N +++R++ I + + G S+ RG+ +++T+D F G G + F Sbjct: 513 DLSNSPISQRQIGAIVSIDHKASTAWLPGNPFASLVRGIEVKLTVDEEGFVGSG-LHAFA 571 Query: 563 ELLHRFFALYADINLFTKLTIVS 585 ++ RF LY N FT+L ++S Sbjct: 572 GVIDRFLGLYVHANSFTQLRVLS 594 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,957,952 Number of extensions: 84864 Number of successful extensions: 197 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 2 Length of query: 604 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 513 Effective length of database: 1,188,985 Effective search space: 609949305 Effective search space used: 609949305 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)