BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0064.p
         (620 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    70   6e-13
gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum ser...    67   3e-12
gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    67   5e-12
gi|300310091|ref|YP_003774183.1| outer membrane protein and rela...    67   6e-12

>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 513 FDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGYTDNTGIPDNNLKLSTERAQAVRDW 572
           FD+G+A +K     V+      + +NP   + + G+TDNTG    N  LS +RA   RD+
Sbjct: 112 FDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTRDY 171

Query: 573 LVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNRRVEI 612
           L  + G+   +F+IQG G   P+ +N +   RARNRRVEI
Sbjct: 172 L-SSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI 210


>gi|300313316|ref|YP_003777408.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 267

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 513 FDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGYTDNTGIPDNNLKLSTERAQAVRDW 572
           F+SG+A L     R++      + +   +R+ + G TDN G+  +N+ LS  RA AV+ +
Sbjct: 165 FESGRATLTPEGKRILDEIAATMLQLKGRRVEIIGNTDNEGLRASNISLSLARADAVKAY 224

Query: 573 LVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNRRVEI 612
           L    G+  +     G G   P+ASN TSEGRARNRR+E 
Sbjct: 225 L-STKGVDDSLLTTSGQGPDRPVASNATSEGRARNRRIEF 263


>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 67.0 bits (162), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 1/111 (0%)

Query: 505 VTLDSLSLFDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGYTDNTGIPDNNLKLSTE 564
           VT  + + FD  KA LK      +   +  ++    + I+  G+TD+ G    N KLS  
Sbjct: 90  VTYAADAFFDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVR 149

Query: 565 RAQAVRDWLVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNRRVEITLV 615
           RA++V+ +LV + G+   +   +G G + P+A N T+ GRA+NRRVEI +V
Sbjct: 150 RAESVKAYLV-SKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEVV 199


>gi|300310091|ref|YP_003774183.1| outer membrane protein and related
           peptidoglycan-associated (lipo)proteins [Herbaspirillum
           seropedicae SmR1]
          Length = 271

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 513 FDSGKAQLKIGSNRVMVSALDMIRKNPHKRILVAGYTDNTGIPDNNLKLSTERAQAVRDW 572
           F+SG+A L     R++      + K   + + + G TDN G+  +N+ LS  RA AV+ +
Sbjct: 169 FESGQATLTPEGKRILDEIAATMLKLKGRHVEIIGNTDNEGLRASNISLSLARADAVKAY 228

Query: 573 LVDASGIPVTQFAIQGYGITHPIASNDTSEGRARNRRVEITL 614
           L  A G+  +  +  G G   P+ASN T+EGRA+NRR+E  +
Sbjct: 229 L-GAKGVDESLLSTSGQGPDRPVASNATAEGRAKNRRIEFRI 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,739,557
Number of extensions: 67329
Number of successful extensions: 202
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 4
Length of query: 620
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 529
Effective length of database: 1,188,985
Effective search space: 628973065
Effective search space used: 628973065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)