BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0055.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310815|ref|YP_003774907.1| alpha/beta hydrolase superfamil...   436   e-124
gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone hydr...    56   3e-09

>gi|300310815|ref|YP_003774907.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  436 bits (1122), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/265 (82%), Positives = 241/265 (90%)

Query: 6   PALVRQFIPTSAGPLHVASMGEGLPVLLLHQTPRSWDEFRDVLPLLAQRYRPIAIDTPGF 65
           PA+ RQF+ TSAGPLH+AS GEG PVLLLHQTPRSWDEFRDVLPLL QRYR +A+DT GF
Sbjct: 6   PAIRRQFVATSAGPLHLASAGEGFPVLLLHQTPRSWDEFRDVLPLLGQRYRALALDTAGF 65

Query: 66  GDSCKPPPAEHSIERWASLALEVMDQLGIRKAAVVGHHTGAVTAMEIAASAPERVAALVL 125
           GDSC+P   EHSIERWA LA+EVMDQL I KAAVVGHHTGAVTAMEIAA+AP+RVAALVL
Sbjct: 66  GDSCRPALHEHSIERWAQLAVEVMDQLEIGKAAVVGHHTGAVTAMEIAAAAPDRVAALVL 125

Query: 126 SSCPYNDAARRSAHAGKRTVDDVEVRTDGAHLQELWQRRQPFYPEGDTDLLTRFMVDALK 185
           SSCP+NDAARR+AHAGKRT+DDV VR DG HLQELWQRRQP+YP GDTDLL+RF+VDA+K
Sbjct: 126 SSCPFNDAARRTAHAGKRTIDDVPVREDGGHLQELWQRRQPYYPAGDTDLLSRFIVDAIK 185

Query: 186 AGPMASHGHIVVRNYHMEDRIGLVRAPTLVLRAGRDPHAAPYSERIAQAIAGSQWQTLDD 245
           AGPMASHGH+VVRNY ME+RIGLVRAPTLVLRAGRDPHAAPY ERIAQAIAGS+ QTL++
Sbjct: 186 AGPMASHGHVVVRNYLMEERIGLVRAPTLVLRAGRDPHAAPYGERIAQAIAGSRLQTLEE 245

Query: 246 GMVPMPDQMPGPFAEAVMDFLQRSC 270
           GMVPMPDQMP  FA+AVM FLQR C
Sbjct: 246 GMVPMPDQMPEQFAQAVMTFLQRVC 270


>gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 55.8 bits (133), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 19/243 (7%)

Query: 12  FIPTSAGPLHVASMGEG-LPVLLLHQT-PRSWDEFRDVLPLLAQRYRPIAIDTPGFGDSC 69
           F   +A  LH    G+  LPVL+L  +   S   +   +P   Q +R +  DT G G S 
Sbjct: 3   FANVNAIRLHYQLEGDASLPVLVLSNSLGTSLSMWDPQMPQWLQHFRVLRYDTRGHGQS- 61

Query: 70  KPPPAEHSIERWASLALEVMDQLGIRKAAVVGHHTGAVTAMEIAASAPERVAALVLSSCP 129
           +  P E SI +  S  + ++D LGI +A   G   G  T M +A   P+R+  L+L +  
Sbjct: 62  EVTPGECSIAQLGSDVIALLDHLGIAQAHFCGLSMGGSTFMWLAVHHPQRINKLILCN-- 119

Query: 130 YNDAARRSAHAGKRTVDDVEVRTDGAHLQELWQR-RQPFYPEGDTDLLTRFMVDALKAGP 188
              A   +A A    ++ V     GA    +  R   P Y +          V AL A  
Sbjct: 120 -TGAKIGTAEAWNSRIETVRREGLGAIAGAVVSRWLTPEYAQAHPQ-----QVQALTAML 173

Query: 189 MAS--HGH----IVVRNYHMEDRIGLVRAPTLVLRAGRDPHAAPYSERIAQA-IAGSQWQ 241
           +A+   G+      VR++ + + I  +RAPTL++    D    P   +  +A I G+Q+ 
Sbjct: 174 LATPAEGYAAACAAVRDHDLREAIAGIRAPTLIIAGSGDVPTPPADAQFMRATIPGAQYV 233

Query: 242 TLD 244
             D
Sbjct: 234 EFD 236


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 994,573
Number of extensions: 44502
Number of successful extensions: 147
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)