BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0048.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydroge...   407   e-115
gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F ...    99   2e-22

>gi|300310807|ref|YP_003774899.1| NAD-dependent formate
           dehydrogenase beta subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  407 bits (1045), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/202 (96%), Positives = 199/202 (98%)

Query: 1   VPVILARGADFYKNYGVGRSHGTLPFQLAGNIKQGGLVEKAFGLTLRQLLEDFGGGSASG 60
           VPVILARGADFYKN+GVGRSHGTLPFQLAGNI+QGGLVEKAFGLTLRQLLEDFGGGSASG
Sbjct: 319 VPVILARGADFYKNFGVGRSHGTLPFQLAGNIRQGGLVEKAFGLTLRQLLEDFGGGSASG 378

Query: 61  RPIRAVQMGGPLGAYLPPSQFDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQ 120
           RPIRAVQMGGPLGAYLP SQFDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQ
Sbjct: 379 RPIRAVQMGGPLGAYLPQSQFDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAMQ 438

Query: 121 FCAVESCGKCTPCRIGSTRGVEVIDKIIANEERPQQIHLLKSLCDTMVNGSLCAMGGMTP 180
           FCAVESCGKCTPCRIGSTRGVEVIDKIIAN++R QQIHLLKSLCDTMVNGSLCAMGGMTP
Sbjct: 439 FCAVESCGKCTPCRIGSTRGVEVIDKIIANDDRAQQIHLLKSLCDTMVNGSLCAMGGMTP 498

Query: 181 FPVLSALNHFPEDFGAPGEQAA 202
           FPVLSALNHFPEDFGAP EQAA
Sbjct: 499 FPVLSALNHFPEDFGAPSEQAA 520


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 99.0 bits (245), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 2/195 (1%)

Query: 1   VPVILARGADFYKNYGVGRSHGTLPFQLAGNIKQGGLVEKAFGLTLRQLLEDFGGGSASG 60
           VP I   G   Y   G   + GT  F ++G++++ G  E   G     LLE   GG   G
Sbjct: 223 VPFIFKVGPQAYAEMGKPNNGGTKIFSISGDVERPGNYEIPLGTPFSTLLE-LAGGMRGG 281

Query: 61  RPIRAVQMGGPLGAYLPPS-QFDTPLDYEAFAAIGAMIGHGGLVAFDDSVDMARQARYAM 119
           + I+AV  GG     +      DT +DY+A A  G+M+G G ++  D++  M +      
Sbjct: 282 KKIKAVIPGGSSAPVIRGDVMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLS 341

Query: 120 QFCAVESCGKCTPCRIGSTRGVEVIDKIIANEERPQQIHLLKSLCDTMVNGSLCAMGGMT 179
            F   ESCG+CTPCR G+     ++++I     + + + +L S+ D +   ++CA+G   
Sbjct: 342 YFYYEESCGQCTPCREGTGWMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAA 401

Query: 180 PFPVLSALNHFPEDF 194
             PV + + +F E+F
Sbjct: 402 AMPVRAFVKNFREEF 416


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,936
Number of extensions: 31477
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)