BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0047.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310807|ref|YP_003774899.1| NAD-dependent formate dehydroge...   460   e-131
gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F ...   116   2e-27

>gi|300310807|ref|YP_003774899.1| NAD-dependent formate
           dehydrogenase beta subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 520

 Score =  460 bits (1183), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/244 (91%), Positives = 231/244 (94%)

Query: 2   MSTNEPVTIYVPRDSTALALGANEVAAAIAAEAQKRGQSIKLVRNGSRGMFWLEPLVEVA 61
           MS N+ VT+YVPRDSTALALGANEVAAAI AEA KRGQSIKLVRNGSRGMFWLEPLVEVA
Sbjct: 1   MSANDTVTVYVPRDSTALALGANEVAAAITAEAHKRGQSIKLVRNGSRGMFWLEPLVEVA 60

Query: 62  TAAGRVAYGPVAPEDVSGLFDAGLLAGGQHTLHLGLTEEIGFLKNQERLTFARVGIIDPL 121
           TAAGRVAYGPVAPEDV+GLFDAGLL GGQH LHLGLTEEI FLKNQERLTFARVGIIDPL
Sbjct: 61  TAAGRVAYGPVAPEDVAGLFDAGLLQGGQHALHLGLTEEIAFLKNQERLTFARVGIIDPL 120

Query: 122 SLEDYLAHEGYAGLKNALAKTPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQKY 181
           SLEDYLAHEGY GLKNALAKTPEAIVQ+MI SGLRGRGGAAFPTGIKWQTVLRA +AQKY
Sbjct: 121 SLEDYLAHEGYVGLKNALAKTPEAIVQEMIASGLRGRGGAAFPTGIKWQTVLRAQSAQKY 180

Query: 182 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSEYPHAIATMNDA 241
           VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIA VAVGATEGYIYVRSEYPH+IAT+  A
Sbjct: 181 VVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAGVAVGATEGYIYVRSEYPHSIATLEQA 240

Query: 242 IAIA 245
           IAIA
Sbjct: 241 IAIA 244


>gi|300311100|ref|YP_003775192.1| NADH dehydrogenase I subunit F
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 70/110 (63%), Gaps = 2/110 (1%)

Query: 123 LEDYLAHEGYAGLKNALAK--TPEAIVQQMIDSGLRGRGGAAFPTGIKWQTVLRAPAAQK 180
           LEDY+   GY  LK  L +  TPE ++  +  SGLRGRGGA FPTG+KW  + R    QK
Sbjct: 24  LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQK 83

Query: 181 YVVCNADEGDSGTFSDRMIMEDDPFTLIEGMTIAAVAVGATEGYIYVRSE 230
           Y+VCN DEG+ GTF DR I+  +P  LIEGM I   A+G T GY Y+  E
Sbjct: 84  YLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYAMGITVGYNYIHGE 133


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,981
Number of extensions: 37204
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)