BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0042.p (304 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 588 e-169 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 179 2e-46 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 164 1e-41 gi|300311233|ref|YP_003775325.1| LysR family transcription regul... 161 5e-41 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 158 7e-40 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 588 bits (1515), Expect = e-169, Method: Compositional matrix adjust. Identities = 286/302 (94%), Positives = 293/302 (97%) Query: 1 VNNSPLLEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVV 60 +NN+PLLEDLRLFCVVARHS+FA SAREVGASPAYISKRIALLEQALGVRLFHRTTRSVV Sbjct: 1 MNNTPLLEDLRLFCVVARHSSFAGSAREVGASPAYISKRIALLEQALGVRLFHRTTRSVV 60 Query: 61 MTEDGGNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 120 MTE+GGNVHEWAR+ILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE Sbjct: 61 MTEEGGNVHEWARRILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASE 120 Query: 121 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGA 180 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHG Sbjct: 121 HPELKIQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGL 180 Query: 181 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGI 240 PADLAALRQHQCLVIRERNQSFGIWRMMGPKG ETVKVSG LASNHGEIIHQWAVDGHGI Sbjct: 181 PADLAALRQHQCLVIRERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGI 240 Query: 241 ILRSIWDVADSLKRGRLVRVLPQYFQEADLCAVYPVQLKNSAKVRECVRFLQKHLDVTAS 300 ILRS WDVADSLKRGRLVRVLPQY+QEADLCAVYP+QLKNSAKVRECVRFLQKHLDV Sbjct: 241 ILRSAWDVADSLKRGRLVRVLPQYYQEADLCAVYPLQLKNSAKVRECVRFLQKHLDVAVL 300 Query: 301 SA 302 A Sbjct: 301 PA 302 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 156/287 (54%), Gaps = 2/287 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 + + F VA + + +AR G +PA I +R+ LE+ LGV+L RTTR +V+T +G Sbjct: 4 FKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTNEGA 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 E ++IL D+E VS G L IS G GR+ V+PLL F +EH ++ + Sbjct: 64 AFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRDVTL 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 L L DR D++ EGID+ IR+ + +L S ++ + RV+ A+PAYL++HG P Sbjct: 124 TLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDE 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L +H CL + G W + KV G + N GE++H WA+ G G+ RS+W Sbjct: 184 LMRHNCLAMSSEGSQRG-WTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMW 242 Query: 247 DVADSLKRGRLVRVLPQYFQEA-DLCAVYPVQLKNSAKVRECVRFLQ 292 +V +++ G LV VL ++ A + AV+ + ++R V FL+ Sbjct: 243 EVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLR 289 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 155/288 (53%), Gaps = 2/288 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 L ++ F VA +F ++A +G S A +S+ + LE LG RL RTTR + +TE G Sbjct: 4 LREIECFIAVADLGSFVKAAEALGISKAAVSRTVLELEARLGSRLMQRTTRRLSLTEAGA 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 E ++I+ +E+ + +SS P GLL+I+ G ++PL F HPE+ + Sbjct: 64 LYLERCKQIVAALEEADDLLSSGSAKPTGLLRINAPLTFGVLHLAPLWPMFLERHPEISL 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLAA 186 + L DR +D+++EG D+ IR+ + L +++ + +CASPAYL HG PA Sbjct: 124 DITLSDRIVDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHE 183 Query: 187 LRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSIW 246 L QHQ + NQS W+ GP+G +V+VS L N+G+ Q A+ G GI + + Sbjct: 184 LAQHQT-ISYSYNQSKDEWQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTF 242 Query: 247 DVADSLKRGRLVRVLPQY-FQEADLCAVYPVQLKNSAKVRECVRFLQK 293 + L+ G+LV +L Y E + AVYP + AK+R + FL + Sbjct: 243 MIDQYLRSGQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTE 290 >gi|300311233|ref|YP_003775325.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 161 bits (408), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/294 (31%), Positives = 159/294 (54%), Gaps = 5/294 (1%) Query: 6 LLEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDG 65 LL ++ +F V +F+E+AR++GA+P+ IS+ IA LE+ALG +L RTTR + ++E G Sbjct: 9 LLNEMAVFAKVVETGSFSEAARQLGATPSAISRAIARLEKALGTQLLQRTTRKLRLSESG 68 Query: 66 GNVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELK 125 ++H R +L+ + ++ + P+G +++S +G +V P + F + HP++ Sbjct: 69 QDIHARCRDMLNAAQAVLAVSGAFDAEPQGQVRVSVPKAVGHALVHPHVPDFLAAHPKVD 128 Query: 126 IQLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGAPADLA 185 + L L DR +DL+++ +DL IR+ P L +R++ +LCA+P YL HG PA Sbjct: 129 VLLRLEDRYMDLIDDEVDLAIRITDHPPPGLMGRRLMRIDHLLCATPHYLATHGTPAHPQ 188 Query: 186 ALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSI 245 AL++H C+ + E + + WR V+V G A+NH + + GI Sbjct: 189 ALKEHSCIYLGE-SPADARWRFRRQGKSVNVEVRGRYAANHTGVRLDAVLRHLGIASLPY 247 Query: 246 WDVADSLKRGRLVRVLPQYFQEADLC----AVYPVQLKNSAKVRECVRFLQKHL 295 + +L+ G LV+VLPQ+ C A+YP ++ V+FL + L Sbjct: 248 FIARPALEEGSLVQVLPQWSFRTHYCGELWALYPATRHLPPRLGAFVQFLAQRL 301 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 158 bits (399), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 138/262 (52%), Gaps = 1/262 (0%) Query: 7 LEDLRLFCVVARHSNFAESAREVGASPAYISKRIALLEQALGVRLFHRTTRSVVMTEDGG 66 LEDL +F A + + + +AR+ +PA S + LE LG RL R+TRS+ +T DG Sbjct: 4 LEDLAIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGE 63 Query: 67 NVHEWARKILDDVEQMMETVSSAKRVPRGLLKISTSFGLGRKVVSPLLSRFASEHPELKI 126 + AR +L +V + V+ +RV G L +S GR ++ L F ++HP + + Sbjct: 64 RYLQHARNVLAEVNAGRDAVAHGRRVIGGNLSLSAPSDFGRNLIGQWLDEFQAQHPAVSL 123 Query: 127 QLELVDRQIDLVNEGIDLDIRVGAGHEPHLFSKRILP-SQRVLCASPAYLKKHGAPADLA 185 Q+ + DR D+ + +D+ IR A + L + + P ++RVLCASP YL +HG P A Sbjct: 124 QVHVSDRVADMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGRPRSPA 183 Query: 186 ALRQHQCLVIRERNQSFGIWRMMGPKGQETVKVSGGLASNHGEIIHQWAVDGHGIILRSI 245 LRQH CL + W V+VSG + GE++ +WAV+G GI +S Sbjct: 184 DLRQHNCLRYVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAYKSR 243 Query: 246 WDVADSLKRGRLVRVLPQYFQE 267 DV L+ GRL +L Y E Sbjct: 244 LDVLADLRNGRLEALLEDYEGE 265 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 930,973 Number of extensions: 38322 Number of successful extensions: 261 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 60 Length of query: 304 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 219 Effective length of database: 1,217,395 Effective search space: 266609505 Effective search space used: 266609505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)