BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0032.p (174 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 182 1e-47 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 165 2e-42 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 165 2e-42 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 159 1e-40 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 158 2e-40 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 182 bits (463), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 98/135 (72%), Positives = 112/135 (82%) Query: 1 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60 VEAARAGEQGRGFAVVA+EVRSLAQRSA AA+EIK LID+SV QV G LV++AG T+ Sbjct: 382 VEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLIDNSVQQVGLGSGLVQKAGVTIS 441 Query: 61 NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120 VV SVQRV+ ++ EIS A+ EQ GIEQVNQAI MDE TQQNAALVE+AA+A+QSL Sbjct: 442 EVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSH 501 Query: 121 QSQRLRELVGVFRLP 135 Q+QRL ELVGVFRLP Sbjct: 502 QAQRLSELVGVFRLP 516 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 165 bits (417), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/134 (77%), Positives = 117/134 (87%) Query: 1 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60 VEAARAGEQGRGFAVVASEVR LAQRSA AA+EIK LI+DSV QV +G LV QAGSTM+ Sbjct: 380 VEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSVNQVTSGTELVAQAGSTMD 439 Query: 61 NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120 VV S+++VSHIVGEIS AT+EQ GIEQVNQAI+ MD TTQQNAALVE+AAAAAQ+LQ Sbjct: 440 AVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTTQQNAALVEEAAAAAQALQD 499 Query: 121 QSQRLRELVGVFRL 134 Q+QRL +LVGVFRL Sbjct: 500 QAQRLLDLVGVFRL 513 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 165 bits (417), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 102/149 (68%), Positives = 123/149 (82%), Gaps = 6/149 (4%) Query: 1 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60 VEAARAGEQGRGFAVVASEVRSLAQRSA AA+EIKALI DSVA+V++G LV +AG TM Sbjct: 383 VEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAGDTMR 442 Query: 61 NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120 +V SVQRV++++ EIS A +EQR+GIEQV+QA+ MD+ TQQNAALVEQAAAA+QSLQ+ Sbjct: 443 EIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQSLQE 502 Query: 121 QSQRLRELVGVFRLPLLPTEEAAQAVELA 149 Q+Q L + V VFRL EA QA+E+A Sbjct: 503 QAQELAQAVSVFRL------EAGQALEVA 525 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/153 (69%), Positives = 123/153 (80%) Query: 1 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60 VEAARAGEQGRGFAVVASEVRSLAQRSAGAA+EIK LI+ SVAQVD G +LVE+AG TM Sbjct: 381 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMS 440 Query: 61 NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120 VV SV+RV+ IVGEIS A+QEQ GIEQVN AI MDE TQQNAALVE+AAAAAQSLQ+ Sbjct: 441 EVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQE 500 Query: 121 QSQRLRELVGVFRLPLLPTEEAAQAVELAGAVA 153 Q++ L + VG F+L P E A++ A +VA Sbjct: 501 QAETLTQTVGFFKLEQQPDEPASRPPVRAASVA 533 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 158 bits (400), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/157 (67%), Positives = 123/157 (78%), Gaps = 7/157 (4%) Query: 1 VEAARAGEQGRGFAVVASEVRSLAQRSAGAAREIKALIDDSVAQVDAGGRLVEQAGSTME 60 VEAARAGEQGRGFAVVASEVRSLAQRSA AA+EIK+LIDDSV +V+AG +LVEQAG+TM Sbjct: 382 VEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVEKVEAGSQLVEQAGATMS 441 Query: 61 NVVISVQRVSHIVGEISDATQEQRTGIEQVNQAIVHMDETTQQNAALVEQAAAAAQSLQQ 120 VV SVQRV+ IVGEI++A++EQ TGIEQVN+AI MDE TQQNAALVE+AAAAAQSLQ Sbjct: 442 EVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQQNAALVEEAAAAAQSLQA 501 Query: 121 QSQRLRELVGVFRLPLLPTEEAAQAVELAGAVAGLPR 157 Q+ L V +F++ A V AG A PR Sbjct: 502 QATNLVGAVSIFKIE-------AHQVAPAGKPASKPR 531 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 344,349 Number of extensions: 10363 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 69 Length of query: 174 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 95 Effective length of database: 1,245,805 Effective search space: 118351475 Effective search space used: 118351475 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)