BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0029.p (315 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanill... 240 1e-64 gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredox... 218 6e-58 gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredox... 193 1e-50 >gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 240 bits (613), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/316 (44%), Positives = 180/316 (56%), Gaps = 7/316 (2%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 L V+V A R EA ++++EL DG LPAF AGAHID+HL GLVR YSL N+P E+H Sbjct: 4 LQVKVAARREEAHDIIALELVAVDGAALPAFTAGAHIDVHLPGGLVRQYSLCNAPHEQHR 63 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y +GVL D SRGGS VHE L++G L+ISAPRN F L A S+L+AGGIG+TPI C Sbjct: 64 YQIGVLRDVNSRGGSVAVHEALKLGDILTISAPRNQFALVPAQH-SLLLAGGIGVTPILC 122 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQ---PGVSSHFDD-EAGTAPDLRAVLGA 181 M L A G +HYCARS AF ++ V H+DD EA DL A+L Sbjct: 123 MAEALAAAGASFEMHYCARSPARQAFRERIAASGFAARVVHHYDDGEAAQKLDLDALLAQ 182 Query: 182 YPKESHFYCCGPTPMLNAFESLCEELGLP--NVHIERFAAEKVAPVQHGSYVAELVRSKS 239 +H Y CGP + G P VH E F A V +G++ +L S Sbjct: 183 ADPATHLYVCGPAGFIAHVVDTARARGWPEAQVHFEYFGAAPVKADGNGAFEVKLASSGQ 242 Query: 240 SLTVPAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAERAAGKTM 299 T+P ++++ L + G+ V SC +G+CG C TRVLEGEP+HRD L+ ERAA Sbjct: 243 VYTIPPERTVIQVLCEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDEERAANDQF 302 Query: 300 MVCVSGCKGQRLVLDL 315 C S + LVLDL Sbjct: 303 TPCCSRARSALLVLDL 318 >gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 218 bits (554), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 140/324 (43%), Positives = 188/324 (58%), Gaps = 14/324 (4%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 L +RV+A+R A + +EL DG LP + GAH+ L L +GLVR+YSL N+P +R Sbjct: 16 LMLRVRAVRQAAQDIRLLELVSQDGAALPPWTPGAHLRLQLQDGLVRAYSLCNTPQQRDC 75 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y++ V + SRGGS ++HEQ++ G+T+S S P N FPL +L+A GIGITP+ Sbjct: 76 YLIAVKREPDSRGGSAFLHEQVQEGTTISASPPVNAFPLIADVRAPLLLAAGIGITPLHA 135 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQL-LGQPGVSSHFD-DEAGTAPDLRAVLGAYP 183 M L QG+ LHY ARS AAF +L G G+S H D A T + A L A P Sbjct: 136 MAAELATQGRRHRLHYFARSLAHAAFFHELAAGSQGMSLHLGLDGAETEHAIAAALAAAP 195 Query: 184 KESHFYCCGPTPMLNAFESLCEELGL--PNVHIERFAAEKVA--------PVQHGSYVAE 233 + S Y CGP+P ++A + G ++H ERFAA + PVQ E Sbjct: 196 RSSPLYVCGPSPFIDAARRHAQLAGWREQDIHFERFAAPAMPAAEADPARPVQAPDSTFE 255 Query: 234 LVRSKSSL--TVPAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKA 291 LV +S L V G+S++ G+ + SC EG CG+CE+ VLEG+P HRD VLS A Sbjct: 256 LVLQRSGLRCQVLPGQSIVAAAAQVGVVIGTSCGEGFCGSCESTVLEGQPWHRDSVLSAA 315 Query: 292 ERAAGKTMMVCVSGCKGQRLVLDL 315 ERA+G+ ++ CVS C G RLVLDL Sbjct: 316 ERASGRRILPCVSRCAGTRLVLDL 339 >gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 193 bits (491), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 168/323 (52%), Gaps = 18/323 (5%) Query: 6 LSVRVQAMRFEALGVVSVELCLPDGGELPAFEAGAHIDLHLANGLVRSYSLSNSPAERHH 65 + + V + E + S L DG LPA+E GAHID+ G++R YSL +R Sbjct: 1 MKLIVDTLTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG 60 Query: 66 YVVGVLNDRASRGGSRYVHEQLRVGSTLSISAPRNNFPLEEAAPLSVLIAGGIGITPISC 125 Y + V + ASRGGS +H+ ++ G L + PRN F L+ +AP +L GIG+TP+ Sbjct: 61 YTIAVKRESASRGGSAALHDVVKAGMELEVGTPRNLFALDASAPEHLLFGAGIGVTPLLA 120 Query: 126 MYHHLRAQGKEAVLHYCARSRKEAAFTAQLLGQPGVSSHFDDEAGTAPD-----LRAVLG 180 M + L A+ K LHY R+R+ AAF A LL ++H P L L Sbjct: 121 MAYRLWAEEKRFTLHYFVRAREHAAF-ADLLENAPFAAHVRFHYAVMPAQMEHYLTVCLE 179 Query: 181 AYPKESHFYCCGPTPMLNAF-----ESLCEELGLPNVHIERF---AAEKVAPVQHGSYVA 232 A KE+H Y CGP P ++A + EE +H+E F A A G++ Sbjct: 180 AGSKEAHVYTCGPAPFMDAVVKCASATRSEE----AIHLEHFQAAPAAPAAAGGDGAFEV 235 Query: 233 ELVRSKSSLTVPAGKSLLDTLLDAGIAVDHSCREGVCGACETRVLEGEPEHRDGVLSKAE 292 +L S + +P G ++D L GI +D SCREG+CG C +LEGEP+HRD LSK E Sbjct: 236 KLASSGKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKE 295 Query: 293 RAAGKTMMVCVSGCKGQRLVLDL 315 +AA + CVS + LVLDL Sbjct: 296 KAANDQICTCVSRARSGMLVLDL 318 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,032,113 Number of extensions: 45032 Number of successful extensions: 135 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 4 Length of query: 315 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 230 Effective length of database: 1,217,395 Effective search space: 280000850 Effective search space used: 280000850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)