BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0023.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310338|ref|YP_003774430.1| glyoxalase II protein [Herbaspi...   164   8e-42

>gi|300310338|ref|YP_003774430.1| glyoxalase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  164 bits (415), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 97/286 (33%), Positives = 140/286 (48%), Gaps = 7/286 (2%)

Query: 1   MDVLGIDEIIYGADDLPTCRRFFLDWGMVLEQESAAELVFVSQNGCRVIVRDSADPSLPP 60
           M+++G D +++G DDLP CR++ LD+G+    + A    F + +G  V++R   D SLPP
Sbjct: 1   MNIIGPDALVFGVDDLPACRQYLLDYGL----KDAGGDRFEALDGTAVVLRAKDDASLPP 56

Query: 61  AIEAGPTLREVVWGVSSAAVLDKFASRIGGLPGFLNDGRRVGCTDPNGLAVRFQVSTKRE 120
           A+     LRE V+GV+ +A LD   + +            V   D  G A+ FQ++ +R 
Sbjct: 57  AMGTASLLRETVYGVADSATLDAIETELRRDREVSRRDGVVRSVDDMGFALAFQLTVRRP 116

Query: 121 VELQCARMNTWNEKNRINQRS--PIYERAAPIEVGHVVFFVKDVKACEKFYCEHFGFVPS 178
           + L   R+N      R       P    A P  + HVV+FV D    E FY    GFV +
Sbjct: 117 LTLPAERVNGPGHAQRAPNELGLPPELPALPRTLSHVVYFVPDAAKAEAFY-HRLGFVCT 175

Query: 179 DRYPERGAFLRCGDVGGHHDIFLLQPPEARAGLNHVAFTVRDIHEVFGGGMHMSRQGWDT 238
           DR+   G FLR      HH +F++Q P    G  H  F +    E+   G     +G+ +
Sbjct: 176 DRFTGVGPFLRPAGTLDHHTLFMIQTPPFMKGCEHFTFHMGGPTELLLAGTRFVEKGYQS 235

Query: 239 QLGPGRHPISSAYFWYFKNPAGGLIEYYADEDQLDAHWEPRDFEPG 284
             GPGRH   S +FWYF +P G  +EY AD D  D  W  R+   G
Sbjct: 236 FWGPGRHRFGSNWFWYFNSPLGCHVEYDADMDLHDQSWAAREVPMG 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,155,885
Number of extensions: 51870
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)