BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0013.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A...    59   5e-10

>gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 144/326 (44%), Gaps = 33/326 (10%)

Query: 2   KNLFASATSALALVAAVGAFVVPAMAQAA-PEEVTYLLPAPPNSPAFAPWVLAQHKGYYA 60
           ++    A +AL + A  G   +P ++ AA P +V  L     +   ++P  L   K  + 
Sbjct: 4   RDFLRLAPAALGVTALGG---IPLLSSAAQPPKVIRL-----DYAYYSPPSLVLRKFGWL 55

Query: 61  DENLK-----VSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRANGIPVKAIAVLGAG 115
           +E+LK     V +++++G     + + + +   G   G   ++ RANG PVKA+ +    
Sbjct: 56  EEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARANGNPVKAVYIYSRP 115

Query: 116 SVTMVAANPAEGIKTLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGLSKTDVQI----QAA 171
             T +A      +K++ +LKGK +     TD  Y   L +L   GL K+DV+I     A 
Sbjct: 116 EWTALAVGKESPVKSINELKGKKIAATKGTD-PYLFLLRALHENGLKKSDVEIVHLQHAD 174

Query: 172 GPSGVWQLYTSGKSQGFAGV-PDWVVNATDAGAKLELLDNGGFKSMAQAILASDDTIKKN 230
           G + + Q    G+   +AG+ P    +  +AG++L +  N  F +    +  SD    ++
Sbjct: 175 GRAALEQ----GRVAAWAGLDPHLAASELEAGSRL-IYRNVNFNTYG-FLNVSDSFAARH 228

Query: 231 PELLKRLVRATLRGMQDIMKDPKAAADDYVAALPTYKGKEASIQTTFEMYNKYVYASQKT 290
           P+ +KR++ A  R    I+  P    D+ VA L       A +       N +   SQ  
Sbjct: 229 PDQVKRVIAAYERARSWIIAHP----DETVALLSEESKLSAPVARLQLKRNDF---SQPQ 281

Query: 291 LGQIDPSRMDAVQKFYVSEGIVSKAT 316
           +G+     + A     + E +V   T
Sbjct: 282 IGREHIEALRAAAPILLEEDLVKSGT 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 886,699
Number of extensions: 33993
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)