BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0010.p (118 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 201 1e-53 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 112 1e-26 gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (... 101 2e-23 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 95 1e-21 gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 95 2e-21 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 201 bits (512), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 104/118 (88%), Positives = 112/118 (94%) Query: 1 VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60 V+HVEAGQKLVDEAG TMD+VV+SIQQVNDLMSEITAAS+EQSSGISQINIAISQMDEVT Sbjct: 425 VQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVT 484 Query: 61 QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAPARETVMHPRMGLLSAA 118 QQNAALVEESASAAQSMAQQA+SLRDAV+VFR+EQ QPAVA RE V+HP MGLLSAA Sbjct: 485 QQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPREQVIHPAMGLLSAA 542 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 112 bits (279), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/102 (53%), Positives = 81/102 (79%) Query: 1 VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60 V+ V+AG +LV +AG TM V+ ++Q+V D+MSEI+AAS+EQS+GI Q++ A++QMDE T Sbjct: 420 VDRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEAT 479 Query: 61 QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAP 102 QQNAALVE++++AA+S+ QQA +L V++FR+ A P V P Sbjct: 480 QQNAALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGPTVKP 521 >gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 101 bits (251), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 61/97 (62%), Positives = 82/97 (84%) Query: 1 VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60 VE V+AG KLVDEAG TM ++V S++ V D+M EITAAS EQS+GI+++N AI+Q+DE+T Sbjct: 420 VEKVDAGGKLVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVNHAITQIDEIT 479 Query: 61 QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQ 97 QQNAALVE++A+AA+S+ +QAD L AV+VFRL+ AQ Sbjct: 480 QQNAALVEQAAAAAESLQEQADVLARAVAVFRLKTAQ 516 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 95.1 bits (235), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 2/110 (1%) Query: 1 VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60 V V+ G +LV++AG TM +VV S+++V D+++EI+AAS+EQ+ GI QIN+AI+QMD+VT Sbjct: 422 VGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVT 481 Query: 61 QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAPARETVMHP 110 QQNAALVEE+A+AA SM QA L VSVFRL + +P V RE + P Sbjct: 482 QQNAALVEEAAAAAASMQTQAGRLMQMVSVFRLSEREPLV--RREIDVTP 529 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 94.7 bits (234), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 2/111 (1%) Query: 1 VEHVEAGQKLVDEAGQTMDQVVQSIQQVNDLMSEITAASSEQSSGISQINIAISQMDEVT 60 VE VEAG +LV++AG TM +VV S+Q+V D++ EI AS EQS+GI Q+N AI+QMDEVT Sbjct: 423 VEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVT 482 Query: 61 QQNAALVEESASAAQSMAQQADSLRDAVSVFRLEQAQPAVAPARETVMHPR 111 QQNAALVEE+A+AAQS+ QA +L AVS+F++E Q VAPA + PR Sbjct: 483 QQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQ--VAPAGKPASKPR 531 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.117 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 265,166 Number of extensions: 6842 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 63 Length of query: 118 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 44 Effective length of database: 1,269,480 Effective search space: 55857120 Effective search space used: 55857120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 124 (52.4 bits)