BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0008.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 115 4e-27 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 100 2e-22 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 94 6e-21 gi|300311602|ref|YP_003775694.1| glutamine ABC transporter perme... 86 2e-18 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 86 2e-18 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 112/189 (59%) Query: 12 EIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWLVVAFADVMRAL 71 E+ + P + +G+G T+L +LA + GL+LG LAV R R + W + +MR Sbjct: 7 ELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGT 66 Query: 72 PPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAARST 131 P L+ I V+++ P + + S TA L L+L +AY ES+ I + RGQ AA S Sbjct: 67 PLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSV 126 Query: 132 GLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQAASSNAGNP 191 GL++ QT+ +I+PQA+R+AVP ++N +IS+ K+T+L SV+ ++E++ + + P Sbjct: 127 GLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRP 186 Query: 192 TPLMLGAAA 200 PL + AAA Sbjct: 187 LPLYVAAAA 195 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 99.8 bits (247), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 12/223 (5%) Query: 8 FFNAEIAARYWPD-ILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWLVVAFAD 66 F A + + D +L G+GVTV L L+ L+LG L +LR R L + + Sbjct: 10 FLQAPSTGQTYLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRALSGFAACYVE 69 Query: 67 VMRALPPLILIIVLFFAFPYI----DLAMS------SFTATWLALTLVLAAYAEESIWAG 116 + R +P L+ I + +FA P + D + F L L + AA E + +G Sbjct: 70 LFRNVPLLVQIFIWYFAMPELLPWGDAVKALPPMTQQFVMAMLCLGMFTAARVCEQVRSG 129 Query: 117 IASLPRGQSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSE 176 I SLPRGQ A + GL+ GQT + V+LP A+R+ +PPLT+ ++I KN+A+ S + L E Sbjct: 130 IESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKNSAVASTIGLLE 189 Query: 177 ILNTAQAASSNAGNPTPLMLGAA-AYLVIFIPVVLFARWLETR 218 + + P + AY++I I V+ R LE + Sbjct: 190 LAAQGRQLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERK 232 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 94.4 bits (233), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 119/242 (49%), Gaps = 29/242 (11%) Query: 7 TFFNAEIAARYWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLR-ATGKRG--------- 56 +FF EI Y P + G +T+ ++ + +G GL L V R A + G Sbjct: 3 SFFQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYC 62 Query: 57 LVWLVVAFADVMRALPPLILIIVLFFAF-PYI-----------DLA------MSSFTATW 98 + W + + +R P + I+++ FA P + DLA +F + Sbjct: 63 VQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAV 122 Query: 99 LALTLVLAAYAEESIWAGIASLPRGQSEAARSTGLSWGQTMVAVILPQALRMAVPPLTNR 158 LA+TL AY E AGI S+ RGQSEA+RS G+S+ T+ V+LPQA R +PPL N Sbjct: 123 LAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNN 182 Query: 159 VISITKNTALGSVVALSEILNTAQAAS-SNAGNPTPLMLGAAAYLVIFIPVVLFARWLET 217 I+I K+++L S + L+E+ A+ S + A P + + Y +I + + R LE Sbjct: 183 AIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEA 242 Query: 218 RW 219 R+ Sbjct: 243 RY 244 >gi|300311602|ref|YP_003775694.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 86.3 bits (212), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 96/167 (57%), Gaps = 1/167 (0%) Query: 18 WPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVW-LVVAFADVMRALPPLIL 76 WP ++ G VTV ++ A + G +LGL + + R + +R +++ L + ++R P L+ Sbjct: 12 WPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYLTLVRGTPLLVQ 71 Query: 77 IIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAARSTGLSWG 136 + + FF P++ + + ++ L L + AY E + I S+ RGQ EAARS GL + Sbjct: 72 LFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQMEAARSLGLPYR 131 Query: 137 QTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQA 183 M VILPQA +PPL N I++ KN+AL S++ ++++++ + Sbjct: 132 MAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEK 178 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 99/177 (55%), Gaps = 1/177 (0%) Query: 17 YWPDILRGMGVTVLLSLAVIASGLLLGLSLAVLRATGKRGLVWLVVAFADVMRALPPLIL 76 + P +L+G VTV +++ ++GL LA+++ + + + +++R LP ++ Sbjct: 9 FLPILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSRLKPVALAGATIVNIIRGLPIIVQ 68 Query: 77 IIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAARSTGLSWG 136 + ++F P I + +S+F A + L + +AY E+ AGI ++ GQ EAA+S G+ Sbjct: 69 LFYIYFVLPDIGIQLSAFQAGVVGLGIAYSAYQAENFRAGIEAVDMGQIEAAQSIGMRGP 128 Query: 137 QTMVAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQA-ASSNAGNPT 192 M V+LPQA R+A+PP N ++ + K+++L S + + E+ Q ASS N T Sbjct: 129 LIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASSTFQNMT 185 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 528,139 Number of extensions: 15800 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 139 Number of HSP's successfully gapped: 19 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)