BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0007.p
         (86 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas...   122   6e-30
gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas...   112   6e-27
gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa...   105   5e-25
gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo...   103   3e-24
gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa...    96   7e-22

>gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  122 bits (306), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 67/81 (82%)

Query: 1   MLFDEPTSALDPELVGSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIIEE 60
           MLFDEPTSALDPELVG VL VM+QL E GMTM+VVTHEM FAR  +DRV+F+D GVI+EE
Sbjct: 158 MLFDEPTSALDPELVGEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEE 217

Query: 61  GPPEQIFGDPQQARTKAFVAR 81
           GPP+Q+ GDP   RT+ F+ +
Sbjct: 218 GPPQQVLGDPHHERTRDFLRK 238


>gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  112 bits (280), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 62/79 (78%)

Query: 1   MLFDEPTSALDPELVGSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIIEE 60
           MLFDEPTSALDPELVG VLQV+R L   GMTM++VTHEM FAR  AD VV MD G I+E 
Sbjct: 167 MLFDEPTSALDPELVGEVLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEA 226

Query: 61  GPPEQIFGDPQQARTKAFV 79
           GPP  IF  PQQART++F+
Sbjct: 227 GPPGAIFTAPQQARTRSFL 245


>gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  105 bits (263), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 59/81 (72%)

Query: 1   MLFDEPTSALDPELVGSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIIEE 60
           +LFDEPTSALDPELVG VL VMR L   GMTM+VVTHEM FAR  ADRV F+  G I+E 
Sbjct: 158 ILFDEPTSALDPELVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVES 217

Query: 61  GPPEQIFGDPQQARTKAFVAR 81
           G   Q+  +PQ ART+ F+ R
Sbjct: 218 GAAAQVLAEPQHARTQDFLRR 238


>gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  103 bits (257), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 61/85 (71%)

Query: 1   MLFDEPTSALDPELVGSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIIEE 60
           MLFDEPTSALDPE++  VL VM  L + GMTM+VVTHEM FAR  A+RVVFMD GV++E+
Sbjct: 158 MLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVED 217

Query: 61  GPPEQIFGDPQQARTKAFVARFAQH 85
              ++ F  P+  R + F+A+   H
Sbjct: 218 CAKDEFFAQPRSERARDFLAKIITH 242


>gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score = 95.5 bits (236), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 57/80 (71%)

Query: 1   MLFDEPTSALDPELVGSVLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIIEE 60
           MLFDE TSALDPEL   VL+VM  L   GMTM++VTHEMAFAR  AD +VFM  G + E 
Sbjct: 162 MLFDEVTSALDPELTAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEI 221

Query: 61  GPPEQIFGDPQQARTKAFVA 80
           GPP+++F  P+ A  + FV+
Sbjct: 222 GPPDELFSHPKTAELQKFVS 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 221,493
Number of extensions: 5560
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 25
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 26
Length of query: 86
Length of database: 1,619,870
Length adjustment: 56
Effective length of query: 30
Effective length of database: 1,354,710
Effective search space: 40641300
Effective search space used: 40641300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 123 (52.0 bits)