BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0006.p (153 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 112 2e-26 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 112 2e-26 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 111 3e-26 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 107 3e-25 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 107 3e-25 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 112 bits (279), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 51/108 (47%), Positives = 78/108 (72%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++++ L K + +LRGID +R +++CVIGPSGSGKST LRC N LEE S G I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 67 DGQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQRF 114 +G + + +LNA+R ++GMVFQ+FNL+PHM+VL N+++A +V++ Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKL 108 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 112 bits (279), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 52/108 (48%), Positives = 75/108 (69%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++E+ G+HK + NTVLRG+ +V G+++ +IG SGSGKST LRC NRLE+ AGQI V Sbjct: 4 VVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 Query: 67 DGQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQRF 114 G + A DL +R+ +G+VFQ +NL+PH++VL N+ L V+R Sbjct: 64 CGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRM 111 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 111 bits (277), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 52/111 (46%), Positives = 78/111 (70%), Gaps = 1/111 (0%) Query: 5 APILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQI 64 + I++I LHKS+ N VL G+ L V+ GQ++ +IG SGSGKST+LRC N LE+ AG I Sbjct: 2 SAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDI 61 Query: 65 VVDGQDIMH-ARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQRF 114 V G DI H + +L +R+++G+VFQ +NL+PH++V N+ LAL +++ Sbjct: 62 QVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKM 112 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 107 bits (268), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 72/120 (60%) Query: 6 PILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 PI+EI + K + N VL GI L V GQ++ +IG SGSGKSTMLRC N LE G I Sbjct: 2 PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61 Query: 66 VDGQDIMHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQRFGLXWNRWACWR 125 V G + H L +R+ +GMVFQ +NL+PH++V N+ML+ + V++ R + Sbjct: 62 VAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 107 bits (268), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 73/110 (66%), Gaps = 5/110 (4%) Query: 3 LAAPILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAG 62 + PI+E+ GL KS+ + VL+ +DL V P Q++ VIGPSGSGKST LRC N LE+ G Sbjct: 1 MTEPIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGG 60 Query: 63 QIVVDGQDI-----MHARTDLNAVRQKIGMVFQQFNLYPHMSVLGNVMLA 107 + V G+ + M L+ +R ++GMVFQ FNL+PH++VL N+ LA Sbjct: 61 TVKVCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLA 110 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 434,120 Number of extensions: 16188 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 87 Number of HSP's gapped: 240 Number of HSP's successfully gapped: 87 Length of query: 153 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 76 Effective length of database: 1,255,275 Effective search space: 95400900 Effective search space used: 95400900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)