BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0097.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313708|ref|YP_003777800.1| AsnC family transcription regul... 274 2e-75 gi|300312760|ref|YP_003776852.1| transcription regulator protein... 126 8e-31 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 99 2e-22 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 90 1e-19 gi|300312130|ref|YP_003776222.1| glutamate uptake transcription ... 88 3e-19 >gi|300313708|ref|YP_003777800.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 274 bits (701), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 135/156 (86%), Positives = 146/156 (93%) Query: 5 LDLDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQ 64 +LDDLDRRIL+ALQ+DASQTNQELAA+VHASPPTCLRRVKRLV+ GVIARQVALLD + Sbjct: 3 FELDDLDRRILKALQADASQTNQELAARVHASPPTCLRRVKRLVEGGVIARQVALLDAQK 62 Query: 65 LASTLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 +A+ LTA+VEITLDRQGEEEQQAFEALVA E AVQQCYRVSPGPDFVLVVLVRDM +YHA Sbjct: 63 VAAALTAVVEITLDRQGEEEQQAFEALVADEPAVQQCYRVSPGPDFVLVVLVRDMSSYHA 122 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPLGAAA 160 LAHRLFASQRNVRNVRSYFSIHRSKFETAIP+ AA Sbjct: 123 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPIDDAA 158 >gi|300312760|ref|YP_003776852.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 126 bits (317), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 94/154 (61%) Query: 7 LDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQLA 66 LD +DR++L LQ D + + LA ++H S PTCLRR++ L +AG+I+ +VA++DP L Sbjct: 8 LDKVDRKLLNMLQKDNQISTRVLAEKLHISQPTCLRRIRDLREAGIISAEVAMVDPFALG 67 Query: 67 STLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 + A +EI+L+ Q ++ Q FE +A EA V QCY VS D+ L V V DM AY+ Sbjct: 68 YGMLAFLEISLNNQSDQHMQDFEQRMAKEAEVMQCYFVSGEYDYFLAVHVIDMDAYYQFV 127 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAIPLGAAA 160 R+ + NVR+ +S F + R+KF T I A Sbjct: 128 RRVISGSGNVRHFQSRFPMKRAKFTTRIAFDEKA 161 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 98.6 bits (244), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 86/151 (56%) Query: 5 LDLDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQ 64 ++LD D RIL LQ ++S +N ELA++++ SP L RVKRL G+I+R VAL DP Sbjct: 1 MELDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHL 60 Query: 65 LASTLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 L + V++ L+RQG E FE V+ V + Y ++ D++L ++V D+ Sbjct: 61 LGLKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEH 120 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSKFETAIP 155 ++N+RS F++ + K++TA+P Sbjct: 121 FIVDHLTKIPGIKNIRSSFALKQIKYKTALP 151 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 78/152 (51%) Query: 5 LDLDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQ 64 +++D D +L LQ D TN L +VH S RRV+RL +A VI R A+LDPA Sbjct: 4 INVDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAV 63 Query: 65 LASTLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHA 124 + +TA +TLDRQGE + FE V V +C+ V+ D++L ++ D+ A+ Sbjct: 64 VGLGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSE 123 Query: 125 LAHRLFASQRNVRNVRSYFSIHRSKFETAIPL 156 V NV+S ++ + K +PL Sbjct: 124 FMMTRLLRLPGVTNVKSNITLKKVKQSHELPL 155 >gi|300312130|ref|YP_003776222.1| glutamate uptake transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 88.2 bits (217), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 7 LDDLDRRILQALQSDASQTNQELAAQVHASPPTCLRRVKRLVDAGVIARQVALLDPAQLA 66 +D DRRIL+ LQ D+++ E+A V+ S C RR++RL GVI R+V LLD +L Sbjct: 2 IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQRLEAEGVIKRRVVLLDAEKLN 61 Query: 67 STLTALVEITLDRQGEEEQQAFEALVAGEAAVQQCYRVSPGPDFVLVVLVRDMPAYHALA 126 ++T LVEI + + F +V V + +R+S D++L V+V ++ AY ++ Sbjct: 62 VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVHRMSGHIDYMLKVMVPNIGAYDSVY 121 Query: 127 HRLFASQRNVRNVRSYFSIHRSKFETAIPLGAA 159 RL S + +V S FS+ K TA+PL A Sbjct: 122 KRLI-SAVELDDVSSSFSMETLKSTTALPLMYA 153 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 435,404 Number of extensions: 15794 Number of successful extensions: 92 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 9 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)