BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0096.p
         (452 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine pyropho...   804   0.0  

>gi|300313706|ref|YP_003777798.1| UDP-N-acetylglucosamine
           pyrophosphorylase [Herbaspirillum seropedicae SmR1]
          Length = 452

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/452 (88%), Positives = 422/452 (93%)

Query: 1   MNIVILAAGMGKRMQSALPKVLHPLAGKPLLGHVIDTARQLVPTQLCVIYGHGGDAVPKA 60
           MNIVILAAGMGKRMQS+LPKVLHPLAGKPLLGHVIDTAR L P++LCVIYGHGGDAVP+A
Sbjct: 1   MNIVILAAGMGKRMQSSLPKVLHPLAGKPLLGHVIDTARALAPSRLCVIYGHGGDAVPQA 60

Query: 61  FAGQGLSFALQEPQLGTGHAVMQAVPHLDDGAPTLVLYGDVPLTTAASLQRLLDAAGQDK 120
           FA + L+FA QEPQLGTGHAVMQA+PHL+DG PTLVLYGDVPLTTAASLQRLL AAGQDK
Sbjct: 61  FADRDLAFARQEPQLGTGHAVMQALPHLEDGVPTLVLYGDVPLTTAASLQRLLAAAGQDK 120

Query: 121 LGVLTVTLDNPTGYGRIVREDGQIKRIVEQKDASEAERAIREVNTGIIVAPTARLRQWLA 180
           LGVLTVTLD+PTGYGRIVRE+G+I RIVEQKDAS AERAI EVNTGIIVAPTARLR WLA
Sbjct: 121 LGVLTVTLDDPTGYGRIVRENGKITRIVEQKDASPAERAITEVNTGIIVAPTARLRDWLA 180

Query: 181 KLSNNNAQGEYYLTDVIAAAVADGVEVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAH 240
           KLSN+NAQGEYYLTDVIAAAVADGV+VVSAQPDDVAETLGVNSKVQLAELERVHQRNIA 
Sbjct: 181 KLSNDNAQGEYYLTDVIAAAVADGVDVVSAQPDDVAETLGVNSKVQLAELERVHQRNIAT 240

Query: 241 GLLEKGVTLADPARIDVRGALECGRDVSIDVNCVFEGQVSIGEGSSIGAHCVIRNARIGA 300
            LLE GVTLADPARIDVRG L+CGRDVSIDVNCVFEG VSIGEG+SIG HCVIRNA I A
Sbjct: 241 ALLEAGVTLADPARIDVRGTLDCGRDVSIDVNCVFEGCVSIGEGASIGPHCVIRNASIAA 300

Query: 301 GVAIKPFTHIEDAVVGAGGQIGPYARLRPGTELAQDVHIGNFVEVKNSNVGVGSKANHLA 360
           G +IK FTHIEDAVVGAG Q+GPYARLRPGTELA +VHIGNFVEVKNS +G+GSKANHLA
Sbjct: 301 GASIKAFTHIEDAVVGAGAQVGPYARLRPGTELADEVHIGNFVEVKNSVIGLGSKANHLA 360

Query: 361 YVGDADVGSGVNVGAGVITCNYDGANKFRTIIEDGAFIGSDTQLVAPVRVGKGATIGAGT 420
           YVGDADVGS VN+GAGVITCNYDGANKFRT IED AFIGSD+QLVAPV VGKGAT+GAGT
Sbjct: 361 YVGDADVGSKVNIGAGVITCNYDGANKFRTTIEDEAFIGSDSQLVAPVVVGKGATLGAGT 420

Query: 421 TLTKDAPADQLTLSRAKQLSLAGWQRPVKIKK 452
           TLTKDAPA QLT+SRAKQLSL GWQRPVKIKK
Sbjct: 421 TLTKDAPAGQLTISRAKQLSLPGWQRPVKIKK 452


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,557,595
Number of extensions: 75416
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 268
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,203,190
Effective search space: 437961160
Effective search space used: 437961160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)