BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0092.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313689|ref|YP_003777781.1| LysR family transcription regul... 451 e-128 gi|300312482|ref|YP_003776574.1| LysR family transcription regul... 181 4e-47 gi|300313657|ref|YP_003777749.1| LysR family transcription regul... 155 4e-39 gi|300310291|ref|YP_003774383.1| LysR family transcription regul... 69 4e-13 gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 59 5e-10 >gi|300313689|ref|YP_003777781.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 451 bits (1161), Expect = e-128, Method: Compositional matrix adjust. Identities = 214/251 (85%), Positives = 234/251 (93%) Query: 1 MVLTPAGEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFR 60 MVLTPAGEVLMA+ARRNLLE+EQV+AEV+GLHAVGQ V+TLACSEGFAWDLLPNV A FR Sbjct: 55 MVLTPAGEVLMAYARRNLLEMEQVLAEVRGLHAVGQGVITLACSEGFAWDLLPNVTAQFR 114 Query: 61 EQYPGMQFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHP 120 EQYPG+QFKL+VVGAA+ASQMVIDGEADISVTYSL P EGL +AYRESGP+FALM+RDHP Sbjct: 115 EQYPGLQFKLHVVGAARASQMVIDGEADISVTYSLAPAEGLAVAYRESGPVFALMKRDHP 174 Query: 121 LAARKLLSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARS 180 LA+R LL+L+DLSPYPLALPE G+TVRQLFDIAC MRGLLF+PVFTSHSLGAVYRFT RS Sbjct: 175 LASRTLLALSDLSPYPLALPEVGTTVRQLFDIACSMRGLLFSPVFTSHSLGAVYRFTTRS 234 Query: 181 PDTVALGGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAA 240 PDTVALGGFLTV ERAEED M LV MAESELHQRT+QVQTMAGRKLPPAVAAF DFL+AA Sbjct: 235 PDTVALGGFLTVHERAEEDGMILVAMAESELHQRTVQVQTMAGRKLPPAVAAFSDFLIAA 294 Query: 241 IRQIRTRHELG 251 +RQ+R R ELG Sbjct: 295 LRQVRARQELG 305 >gi|300312482|ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 154/241 (63%), Gaps = 1/241 (0%) Query: 1 MVLTPAGEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFR 60 MVL+ GE+L A AR+ LE ++V+A+++ L + V L+ SEGFA D LP ++ F+ Sbjct: 60 MVLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQ 119 Query: 61 EQYPGMQFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHP 120 ++YPG F+L V A S+ V +G ADI +T++ P + + +R+ GPI +MR+DHP Sbjct: 120 KKYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHP 179 Query: 121 LAARKLLSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARS 180 LA + +S+ L PYP+ALP+ +T+RQLFDIAC + ++ PV TS+ + +++ + + Sbjct: 180 LARFRQISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDN 239 Query: 181 PDTVALGGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVAA 240 D +++ G +TV+ R + + P+ + R ++VQT+AGR LP +V F+D+LVA Sbjct: 240 -DALSITGEVTVRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDYLVAE 298 Query: 241 I 241 + Sbjct: 299 L 299 >gi|300313657|ref|YP_003777749.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 333 Score = 155 bits (391), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 138/234 (58%), Gaps = 1/234 (0%) Query: 6 AGEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQYPG 65 AGE+L A A R LE E++ E+ L + + V LAC+EGFA + +P + F Q+ G Sbjct: 95 AGELLAAHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKG 154 Query: 66 MQFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHPLAARK 125 ++F+L+V A +Q + +G D+ +T+++ P + + + + PI A+M H LA RK Sbjct: 155 IRFQLSVGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRK 214 Query: 126 LLSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARSPDTVA 185 +SL++L+PYPLA+P++ T+R+L D C R +L P + S+ A+ F + + Sbjct: 215 QVSLSELAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVM-AGQGIG 273 Query: 186 LGGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFLVA 239 L +++ E +A +P+ + +++ L++Q++AGR LP A AF++ L+A Sbjct: 274 FSAALPIRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIA 327 >gi|300310291|ref|YP_003774383.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 6/237 (2%) Query: 4 TPAGEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFREQY 63 T AG +L+ + R V+A+++ + + + + + EGF D++ + F ++Y Sbjct: 62 TEAGALLLEYYREQRSHQSDVLAKLQEIRGLKRGSINIIMGEGFISDMVSGPIKQFCKKY 121 Query: 64 PGMQFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESG--PIFALMRRDHPL 121 P + L++ G + V EA+I + ++ PVE I R P++A++ R PL Sbjct: 122 PEIALVLDLAGTNEVVSAVAADEAEIGLVFN-PPVEA-KIVSRAVARQPMYAIVGRQFPL 179 Query: 122 AAR-KLLSLNDLSPYPLALPEQGSTVRQLFDIACGMRGLLFAPVFTSHSLGAVYRFTARS 180 + + ++L +L+ YP+AL RQL + A + P T++S+ + F Sbjct: 180 LGKVESVTLRELAGYPMALTHLAYGTRQLVEAATLIEKTRLTPTITTNSIAILKHFVKSE 239 Query: 181 PDTVALGGFLTVQERAEEDAMALVPMAESELHQRTLQVQTMAGRKLPPAVAAFIDFL 237 L F E A + A +P+ + L + + T GR+L A + L Sbjct: 240 LGFTLLPLFAVTTELAARELYA-IPVRNALLARSEAHLITRTGRQLSTAANRLLQHL 295 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 58.5 bits (140), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 77/151 (50%) Query: 1 MVLTPAGEVLMAFARRNLLEVEQVMAEVKGLHAVGQSVVTLACSEGFAWDLLPNVMAHFR 60 + LTP GE+ + AR+ + ++E +++ A + V +A A LP V+A +R Sbjct: 59 VTLTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYR 118 Query: 61 EQYPGMQFKLNVVGAAKASQMVIDGEADISVTYSLGPVEGLNIAYRESGPIFALMRRDHP 120 ++YPG+ +L + + ++ G+ DI++T + + S P + + R+DH Sbjct: 119 QRYPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHK 178 Query: 121 LAARKLLSLNDLSPYPLALPEQGSTVRQLFD 151 LA+++ + + L+ + + ++VRQ D Sbjct: 179 LASKRRIKVPQLAGCEMIHLARSTSVRQHLD 209 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 774,812 Number of extensions: 30695 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 8 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)