BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0091.p
         (71 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313689|ref|YP_003777781.1| LysR family transcription regul...    99   5e-23
gi|300313657|ref|YP_003777749.1| LysR family transcription regul...    62   1e-11
gi|300312482|ref|YP_003776574.1| LysR family transcription regul...    58   2e-10

>gi|300313689|ref|YP_003777781.1| LysR family transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 99.4 bits (246), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/51 (96%), Positives = 50/51 (98%)

Query: 21 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERR 71
          MQST+LRYFYQVGRTGSLTAAAERL VAVSAVSRQIAKMEEETGVPLFERR
Sbjct: 1  MQSTSLRYFYQVGRTGSLTAAAERLDVAVSAVSRQIAKMEEETGVPLFERR 51


>gi|300313657|ref|YP_003777749.1| LysR family transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 38/50 (76%)

Query: 21 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFER 70
          +Q TA+RYF +V R GS+T AA  L+VA SA+SRQIA++E E   PLFER
Sbjct: 36 LQETAVRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFER 85


>gi|300312482|ref|YP_003776574.1| LysR family transcription
          regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 39/51 (76%)

Query: 21 MQSTALRYFYQVGRTGSLTAAAERLHVAVSAVSRQIAKMEEETGVPLFERR 71
          +Q TALRYF +V R GS++ A++RL+VA SA+SRQI+ +E+     LFERR
Sbjct: 6  LQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERR 56


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 166,159
Number of extensions: 4495
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 3
Length of query: 71
Length of database: 1,619,870
Length adjustment: 43
Effective length of query: 28
Effective length of database: 1,416,265
Effective search space: 39655420
Effective search space used: 39655420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 123 (52.0 bits)