BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0089.p
         (471 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family [...   522   e-149

>gi|300312476|ref|YP_003776568.1| peptidase, M20/M25/M40 family
           [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score =  522 bits (1344), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/466 (54%), Positives = 320/466 (68%), Gaps = 1/466 (0%)

Query: 1   MSRSTALRLAAEYFDSGRFQRDLQRRIALPTESQNAARADELAAYLREEIAPALAALGFE 60
           MSR+ A+     YFD GRF   L+RR+A+ TESQ  A    L  YL +EI P L ALGF 
Sbjct: 1   MSRAQAIAGVEAYFDDGRFMETLKRRVAIRTESQEPASRPILYDYLHQEITPYLQALGFT 60

Query: 61  TQQIANPVEGAPPLLLARRIESADAVTVLMYGHGDVVNGQEGRWQQDRSPWQLSPDGDRW 120
            + + NP+    P L+A RIE+  A TVL YGHGDVV G + +W+   SPW++  +G+RW
Sbjct: 61  CEVVDNPLPEGSPFLIAERIEAEAAFTVLTYGHGDVVRGYDKQWRAGLSPWEIVVEGERW 120

Query: 121 YGRGTADNKGQHSINLGALAAAIEAAGGKLGCNLKMIFEMGEEVGSPGLYEACRDHADYL 180
           YGRG ADNK QH+IN  AL   ++  GG+LG N+K+I EMGEE GSPGL   C+ +A+ L
Sbjct: 121 YGRGIADNKAQHTINFAALEEVMKVRGGRLGYNVKLILEMGEETGSPGLNAVCQQYAERL 180

Query: 181 QADLFLASDGPRLAASSPTLFLGSRGALQFKLVLDTGNGAHHAGNWGGVLRNPATVLANA 240
           +ADLF+ASDGPR+ A +PT+FLGSRG   F L     +G HH+GNWGG+LRNP   LANA
Sbjct: 181 KADLFIASDGPRVNAPTPTMFLGSRGGCNFDLKCHLRDGGHHSGNWGGLLRNPGVRLANA 240

Query: 241 AASLVDGRGVIRVPGMRPRNVSERVRALVRDFAVGSDDGDPVLDAQWGEPGLSAGERLFA 300
            A LVD RG IRVP + P  + + VR  +    +G    DP +D  WGEP L+  ER+FA
Sbjct: 241 IACLVDERGAIRVPALLPSALPQSVRKALAKVKLGGGPTDPEIDTDWGEPDLTPAERVFA 300

Query: 301 WNTLELIAFEAGNAQRPVGAIPARAQAVFQLRFVVGTVWEDVQQSLRRHLDEHGYADVQI 360
           WNTLE++AF+ GN + PV AIP +A A  Q+RFVVG+      + +R HLDEHGY D+ +
Sbjct: 301 WNTLEVLAFKTGNPEAPVNAIPGQASAHCQIRFVVGSDDAHFIEHIRAHLDEHGYDDIDV 360

Query: 361 EIQAAA-PATRLDPDDAWVRLATGSLQETSGKPVTILPNLGGTIPNHCFSEALGLPTLWM 419
            +      ATRLDPDD WVR    S+QETSGK  T+LPNLGG++PN  FSE LGLPTLW+
Sbjct: 361 SLAGVQFAATRLDPDDEWVRWGLASMQETSGKEPTLLPNLGGSLPNDVFSETLGLPTLWV 420

Query: 420 PHSYPSCSQHAPDEHLLAPVAREGLQLMAGLLWDIGQQGQQVRQQR 465
           PHSYP+CSQHAP+EH+LA V+RE LQLMAGL WD+ +QG  V  +R
Sbjct: 421 PHSYPACSQHAPNEHILASVSRESLQLMAGLFWDLAEQGAAVLARR 466


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,514,268
Number of extensions: 66610
Number of successful extensions: 237
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,198,455
Effective search space: 457809810
Effective search space used: 457809810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)