BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0086.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313686|ref|YP_003777778.1| transmembrane protein [Herbaspi...   353   5e-99
gi|300313750|ref|YP_003777842.1| transmembrane protein [Herbaspi...   137   7e-34

>gi|300313686|ref|YP_003777778.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  353 bits (907), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 176/195 (90%), Positives = 186/195 (95%)

Query: 16  RHKSYEDVLALVAGTLFVSLAVNMYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFFTINIP 75
           RH+SYEDVLALVAGTLF+SL VNMY+QVGLLTGSTAGLAFL HYLTGLPFG VFFTIN+P
Sbjct: 16  RHRSYEDVLALVAGTLFISLGVNMYTQVGLLTGSTAGLAFLAHYLTGLPFGAVFFTINLP 75

Query: 76  FYYFAFRRMGLRFTGKTFCAVALVSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGVGFVML 135
           FYYFA+RRMG RF  KTFCAVALVSGFSLMHP+FI Y KLDLFYSAVLGGLL+GVGFVML
Sbjct: 76  FYYFAWRRMGKRFMLKTFCAVALVSGFSLMHPYFISYGKLDLFYSAVLGGLLIGVGFVML 135

Query: 136 FRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLFVVTPRVLLASILGAVTAN 195
           FRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSL+VV P+VLLASILGAVTAN
Sbjct: 136 FRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLWVVAPKVLLASILGAVTAN 195

Query: 196 LVIALNHRAGRYMGM 210
           L+IALNHRAGRYMGM
Sbjct: 196 LIIALNHRAGRYMGM 210


>gi|300313750|ref|YP_003777842.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  137 bits (345), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/198 (37%), Positives = 118/198 (59%)

Query: 11  SAADLRHKSYEDVLALVAGTLFVSLAVNMYSQVGLLTGSTAGLAFLTHYLTGLPFGVVFF 70
           +A+ +RH   +++     G + V+  ++M   +GL+ G  AG+AFL  Y +G+ FG+ F 
Sbjct: 34  AASPVRHSWIDNLQGQFFGVVMVAFGMSMLHSLGLIIGQIAGVAFLVSYGSGISFGLAFT 93

Query: 71  TINIPFYYFAFRRMGLRFTGKTFCAVALVSGFSLMHPHFIGYAKLDLFYSAVLGGLLMGV 130
            IN+PFY  A  RMG  FT +T  AV  VS  + +  ++I Y  LD    AVL GL +G+
Sbjct: 94  LINLPFYLLAALRMGAAFTWRTLAAVTAVSLLTNIAGNYISYRHLDPAVGAVLAGLCVGI 153

Query: 131 GFVMLFRHGASLGGINVVTLFLQDRYGLRAGKLQMGVDVVIVLCSLFVVTPRVLLASILG 190
           G + LFRH AS GG++++  ++Q+R G +AG L MG D+ +   + + +    +L S+ G
Sbjct: 154 GLIALFRHQASCGGMSILAAYVQERTGFKAGWLLMGFDLALFATAAWFLPMERVLYSLAG 213

Query: 191 AVTANLVIALNHRAGRYM 208
           A+T NL +A NHR   Y+
Sbjct: 214 AITMNLFVAWNHRYEWYI 231


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.145    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,231
Number of extensions: 20175
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)