BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0085.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313685|ref|YP_003777777.1| transcription regulator protein...   236   5e-64

>gi|300313685|ref|YP_003777777.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  236 bits (602), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/130 (91%), Positives = 125/130 (96%)

Query: 1   MQLKLIRTRKDYRAALAEAERLWDAPARSEQADQLDVLTLLIAHYERAHFAIDDPDPIDF 60
           MQLKLIRTRKDYRAALAEAERLWDAPARS QADQLDVLTLLIAHYERAHFAIDDPDPIDF
Sbjct: 3   MQLKLIRTRKDYRAALAEAERLWDAPARSAQADQLDVLTLLIAHYERAHFAIDDPDPIDF 62

Query: 61  LLHVMEARGLSRKDLEPYLGPRGRVSDILNRVRPLTLDMIRKLSAGLHLPADLLIKPYPV 120
           LLHVMEARGLSRKDLEPYLG RGRVSDILNRVRPLTLDMIRKLSAGL+LPADLLI+PYPV
Sbjct: 63  LLHVMEARGLSRKDLEPYLGSRGRVSDILNRVRPLTLDMIRKLSAGLNLPADLLIQPYPV 122

Query: 121 KAASSDLLHA 130
           ++  ++LL A
Sbjct: 123 RSDCAELLSA 132


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 415,017
Number of extensions: 16802
Number of successful extensions: 40
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)