BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0080.p
         (259 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398...   462   e-131

>gi|300313681|ref|YP_003777773.1| hypothetical protein Hsero_4398
           [Herbaspirillum seropedicae SmR1]
          Length = 394

 Score =  462 bits (1190), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/272 (84%), Positives = 242/272 (88%), Gaps = 13/272 (4%)

Query: 1   LQAREALPEKYFIVEISAQLRARQQETLAAFAPLVEWLDALPETFSGVVVGNEVLDAMPV 60
           LQAR ALP++YFIVEISAQLRARQQ+TLAAFAPLV+WLDALP TFSGVVVGNEVLDAMPV
Sbjct: 123 LQARAALPQRYFIVEISAQLRARQQQTLAAFAPLVQWLDALPATFSGVVVGNEVLDAMPV 182

Query: 61  RLAIKAEEGWQERGVTVDATGRLQFADRTVSDLPVAQIPEADTLPAGYLTELSPVAIGFM 120
           RLA+KAE+GWQERGV +DA GRL+F DR+V DLP+AQIP+A  LP GYLTE++PVAIGFM
Sbjct: 183 RLAVKAEQGWQERGVALDAEGRLRFEDRSVDDLPLAQIPDAHELPPGYLTEVAPVAIGFM 242

Query: 121 RTLGRMLASGPGALAILPDYGFPAAEYYLPDRDQGTLMCHYRHHAHTDPFYWPGLQDITA 180
            TLGRMLASGPGALAILPDYGFPAAEYYL DRDQGTLMCHYRHHAHTDPFYWPGLQDITA
Sbjct: 243 HTLGRMLASGPGALAILPDYGFPAAEYYLHDRDQGTLMCHYRHHAHTDPFYWPGLQDITA 302

Query: 181 HVDFTAMAVAAVEEGAEVLAYTSQGAFLLNAGIGELLLRPP-------------KTPLIS 227
           HVDFTAMAVAAVEEGAEVLAYTSQGAFLLNAGIGELLLR                  LIS
Sbjct: 303 HVDFTAMAVAAVEEGAEVLAYTSQGAFLLNAGIGELLLRTSPEDSARYLPLANGMQKLIS 362

Query: 228 PAEMGELFKVLAIGKNVEWPARMLRHDRTHRL 259
           PAEMGELFKVLAIGKNVEWP RMLRHDRTHRL
Sbjct: 363 PAEMGELFKVLAIGKNVEWPQRMLRHDRTHRL 394


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 874,781
Number of extensions: 38680
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,226,865
Effective search space: 215928240
Effective search space used: 215928240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)