BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0078.p (152 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313680|ref|YP_003777772.1| two component response regulato... 291 2e-80 gi|300309981|ref|YP_003774073.1| two component response regulato... 135 2e-33 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 130 6e-32 gi|300313818|ref|YP_003777910.1| two component transcription reg... 128 2e-31 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 127 3e-31 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 291 bits (744), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 147/151 (97%), Positives = 149/151 (98%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MRVLLVEDDPMVGEAVRKGLRQDGF IDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 AVLRTLRERG+AIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151 GRAESLVQVREV+LNPATHEVTV GKPVNLS Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLS 151 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 135 bits (339), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 68/128 (53%), Positives = 91/128 (71%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LL EDD ++ + + + LR G+ D V++G AD AL T+D+ +L+LDLGLP+ GL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VLR LR R S +PVLI TA D+V RV GLD GADDY+ KPF L EL AR+RAL+RR A Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GRAESLVQ 128 G ++++ Sbjct: 121 GGGPTVIR 128 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 130 bits (326), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 1/151 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 M +LLVED+P G+ +R+GL + GF +DWVQ G RT DY +++LD+ LP +G Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 +LR LR R PVL TARD V DRV GL+ GADDYL+KPF EL AR+R L RR Sbjct: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151 R L++ +VVL+ +VT G+ ++L+ Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLT 150 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 95/151 (62%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVED + + K +R T++ +G AD L T+DYA+++LDL LP+ DG+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 VL+ +R RG+ PVLI TAR +ADRV+GL+ GADDYL KPF+LEEL AR++AL RR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151 V + + + T GG+ + L+ Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALT 151 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 127 bits (320), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 1/151 (0%) Query: 1 MRVLLVEDDPMVGEAVRKGLRQDGFTIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 MR+LLVED V EA+ L + G T++W +G A L +E Y +L+LD+ LPQ+DG Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRL-SESYDLLILDVMLPQQDGF 59 Query: 61 AVLRTLRERGSAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 ++L+ LR RG PVL+ TA V +RV LD GADDYL+KPFD EL AR+R L RR Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 GRAESLVQVREVVLNPATHEVTVGGKPVNLS 151 G + +L+ + ++ + T+ G+P+ L+ Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELT 150 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.137 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 492,661 Number of extensions: 20229 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 201 Number of HSP's successfully gapped: 34 Length of query: 152 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 75 Effective length of database: 1,255,275 Effective search space: 94145625 Effective search space used: 94145625 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)