BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0077.p
         (71 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313680|ref|YP_003777772.1| two component response regulato...   134   1e-33
gi|300311750|ref|YP_003775842.1| transcription response regulato...    92   7e-21
gi|300309981|ref|YP_003774073.1| two component response regulato...    55   9e-10

>gi|300313680|ref|YP_003777772.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  134 bits (338), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 66/71 (92%)

Query: 1   VTRASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 60
           V  ++ EF LL AFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK
Sbjct: 148 VNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 207

Query: 61  NVRGVGYLVPA 71
           NVRGVGYLVPA
Sbjct: 208 NVRGVGYLVPA 218


>gi|300311750|ref|YP_003775842.1| transcription response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 92.0 bits (227), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 55/69 (79%)

Query: 1   VTRASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIK 60
           V  ++ EFALL A M RPG +LSRA+LEEKLYGW + +ESNAVE  IH+LR+K+  + IK
Sbjct: 148 VLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEEVESNAVEFLIHSLRRKLDKEAIK 207

Query: 61  NVRGVGYLV 69
           NVRG+G+LV
Sbjct: 208 NVRGMGWLV 216


>gi|300309981|ref|YP_003774073.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score = 55.5 bits (132), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 2/68 (2%)

Query: 4   ASSEFALLHAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKK--VGSDFIKN 61
           ++ E  LL   + R G ++S+ QL + L  W + + +NA+EV++H LRKK  VG   I  
Sbjct: 151 SARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGVRIAT 210

Query: 62  VRGVGYLV 69
           VRG+GY +
Sbjct: 211 VRGLGYCL 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 201,635
Number of extensions: 5948
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 3
Length of query: 71
Length of database: 1,619,870
Length adjustment: 43
Effective length of query: 28
Effective length of database: 1,416,265
Effective search space: 39655420
Effective search space used: 39655420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)